BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646102|ref|NP_208284.1| hypothetical protein
[Helicobacter pylori 26695]
(203 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TNW| Ef-Hand Mol_id: 1; Molecule: Troponin C; Chain:... 39 3e-04
pdb|1TOP| Troponin C >gi|1942982|pdb|1NCX| Troponin C >g... 39 5e-04
pdb|4TNC| Troponin C 37 0.002
pdb|5TNC| Troponin-C 36 0.004
pdb|1TN4| Four Calcium Tnc >gi|3212621|pdb|1TCF| Crystal... 32 0.039
pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C W... 32 0.051
pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue... 30 0.15
pdb|1QGP|A Chain A, Nmr Structure Of The Z-Alpha Domain Of ... 28 0.74
pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogen... 28 0.74
pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase... 28 0.96
pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogen... 27 1.3
pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotrop... 27 1.6
pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase F... 27 2.1
pdb|1QBJ|C Chain C, Crystal Structure Of The Zalpha Z-Dna C... 27 2.1
pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain ... 26 2.8
pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Ki... 26 2.8
pdb|1AJ4| Structure Of Calcium-Saturated Cardiac Troponin... 26 2.8
pdb|3CTN| Structure Of Calcium-Saturated Cardiac Troponin... 26 2.8
pdb|1CJM|A Chain A, Human Sult1a3 With Sulfate Bound 26 3.7
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-... 25 4.8
pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated ... 25 4.8
pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Aden... 25 6.2
pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adeny... 25 6.2
pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Aden... 25 6.2
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 6.2
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 6.2
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Syn... 25 6.2
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetas... 25 6.2
pdb|1PSR|A Chain A, Human Psoriasin (S100a7) >gi|4389154|pd... 25 8.2
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments... 25 8.2
pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Ac... 25 8.2
>pdb|1TNW| Ef-Hand Mol_id: 1; Molecule: Troponin C; Chain: Null; Engineered:
Yes; Mutation: T130i
pdb|1TNX| Ef-Hand Mol_id: 1; Molecule: Troponin C; Chain: Null; Engineered:
Yes; Mutation: T130i
Length = 162
Score = 39.3 bits (90), Expect = 3e-04
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 39 LDKDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDE 98
L ++ K ++ A++ ++ +D F E ++ K K ++EE++ N FD+
Sbjct: 49 LGQNPTKEELDAIIEEVDED-GSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDK 107
Query: 99 GLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYE 158
+ ID+ EEL IL R + E +E EDLM S D + DF E
Sbjct: 108 NADGF---IDI------EELGEIL-----RATGEHVIEEDIEDLMKDSDKNNDGRIDFDE 153
Query: 159 FLK 161
FLK
Sbjct: 154 FLK 156
>pdb|1TOP| Troponin C
pdb|1NCX| Troponin C
pdb|1NCZ| Troponin C
pdb|1NCY| Troponin-C, Complex With Manganese
Length = 162
Score = 38.5 bits (88), Expect = 5e-04
Identities = 34/123 (27%), Positives = 57/123 (45%), Gaps = 15/123 (12%)
Query: 39 LDKDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDE 98
L ++ K ++ A++ ++ +D F E ++ K K ++EE++ N FD+
Sbjct: 49 LGQNPTKEELDAIIEEVDED-GSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDK 107
Query: 99 GLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYE 158
+ ID+ EEL IL A + ++ +E EDLM S D + DF E
Sbjct: 108 NADGF---IDI------EELGEILRATGEHVT-----EEDIEDLMKDSDKNNDGRIDFDE 153
Query: 159 FLK 161
FLK
Sbjct: 154 FLK 156
>pdb|4TNC| Troponin C
Length = 162
Score = 36.6 bits (83), Expect = 0.002
Identities = 33/123 (26%), Positives = 57/123 (45%), Gaps = 15/123 (12%)
Query: 39 LDKDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDE 98
L ++ K ++ A++ ++ +D F E ++ K K ++EE++ + FD+
Sbjct: 49 LGQNPTKEELDAIIEEVDED-GSGTIDFEEFLVMMVRQMKEDAKGKSEEELADCFRIFDK 107
Query: 99 GLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYE 158
+ ID+ EEL IL A + ++ +E EDLM S D + DF E
Sbjct: 108 NADGF---IDI------EELGEILRATGEHVT-----EEDIEDLMKDSDKNNDGRIDFDE 153
Query: 159 FLK 161
FLK
Sbjct: 154 FLK 156
>pdb|5TNC| Troponin-C
Length = 162
Score = 35.8 bits (81), Expect = 0.004
Identities = 33/123 (26%), Positives = 57/123 (45%), Gaps = 15/123 (12%)
Query: 39 LDKDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDE 98
L ++ K ++ A++ ++ +D F E ++ K K ++EE++ + FD+
Sbjct: 49 LGQNPTKEELDAIIEEVDED-GSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDK 107
Query: 99 GLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYE 158
+ ID+ EEL IL A + ++ +E EDLM S D + DF E
Sbjct: 108 NADGF---IDI------EELGEILRATGEHVT-----EEDIEDLMKDSDKNNDGRIDFDE 153
Query: 159 FLK 161
FLK
Sbjct: 154 FLK 156
>pdb|1TN4| Four Calcium Tnc
pdb|1TCF| Crystal Structure Of Calcium-Saturated Rabbit Skeletal Troponin C
pdb|2TN4| Four Calcium Tnc
Length = 159
Score = 32.3 bits (72), Expect = 0.039
Identities = 30/117 (25%), Positives = 48/117 (40%), Gaps = 15/117 (12%)
Query: 45 KAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMA 104
K ++ A++ ++ +D F E ++ K K ++EE++ L FD +
Sbjct: 52 KEELDAIIEEVDED-GSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYI 110
Query: 105 EKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLK 161
+ +EEL A+ R S E E E LM D + DF EFLK
Sbjct: 111 D---------AEEL-----AEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLK 153
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 32.0 bits (71), Expect = 0.051
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 82 KNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNGILYADFKRLSLERGFKEAFED 141
K ++EE++ N FD+ + ID+ EEL IL R + E +E ED
Sbjct: 5 KGKSEEELANCFRIFDKNADGF---IDI------EELGEIL-----RATGEHVIEEDIED 50
Query: 142 LMFSSRVIFDNKEDFYEFLK 161
LM S D + DF EFLK
Sbjct: 51 LMKDSDKNNDGRIDFDEFLK 70
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 30.4 bits (67), Expect = 0.15
Identities = 29/117 (24%), Positives = 47/117 (39%), Gaps = 15/117 (12%)
Query: 45 KAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMA 104
K ++ A++ ++ +D F E ++ K K ++EE++ FD +
Sbjct: 52 KEELDAIIEEVDED-GSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYI 110
Query: 105 EKIDVQISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLK 161
+ +EEL A+ R S E E E LM D + DF EFLK
Sbjct: 111 D---------AEEL-----AEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLK 153
>pdb|1QGP|A Chain A, Nmr Structure Of The Z-Alpha Domain Of Adar1, 15
Structures
Length = 77
Score = 28.1 bits (61), Expect = 0.74
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 77 QKRSLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNGILYADFKRLSLER 133
Q+ S+ E++I+ + EG A + ++ +E+N +LY+ K+ L++
Sbjct: 7 QELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK 63
>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|B Chain B, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|C Chain C, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|D Chain D, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
Length = 501
Score = 28.1 bits (61), Expect = 0.74
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 124 ADFKRLSLERGFKE---AFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
++ KR+SLE G K F D + V F ++ FY H G +A + +
Sbjct: 261 SNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFY-------HQGQCCIAAS---RLF 310
Query: 181 EDSFIYDEFLRSLLEDALK 199
+ IYDEF+R +E A K
Sbjct: 311 VEESIYDEFVRRSVERAKK 329
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 27.7 bits (60), Expect = 0.96
Identities = 11/46 (23%), Positives = 24/46 (51%)
Query: 135 FKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
+K+A + L+ + ++F N+E+F K N ++A++ H
Sbjct: 206 YKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKVALSVANKEH 251
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 27.3 bits (59), Expect = 1.3
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 60 PKEAHSFYELYQSLIAMQKRSLKN----QAEEQIINLIASFDEGLNQMAEKIDVQISQKS 115
PKE F + S++ K +A+ I+ AS + A ++ +I +
Sbjct: 292 PKELEDFKLQHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKII--A 349
Query: 116 EELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINY 175
E NG + ++ LER DL ++ + ++E+LK LNH Y L Y
Sbjct: 350 EGANGPTTPEADKIFLERNIM-VIPDLYLNAGGV---TVSYFEWLKNLNHVSYGRLTFKY 405
>pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
pdb|1FZP|D Chain D, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
Length = 123
Score = 26.9 bits (58), Expect = 1.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 110 QISQKSEELNGILYADFKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGY 168
+I+ E L+ + YAD + +++ F +FE+ + I +NKE Y +NH Y
Sbjct: 4 KINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLT-YISENKEKEYYLKDIINHLNY 61
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 26.6 bits (57), Expect = 2.1
Identities = 11/46 (23%), Positives = 23/46 (49%)
Query: 135 FKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
+K+A + L+ + ++F N+E+F K N + A++ H
Sbjct: 206 YKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEH 251
>pdb|1QBJ|C Chain C, Crystal Structure Of The Zalpha Z-Dna Complex
pdb|1QBJ|A Chain A, Crystal Structure Of The Zalpha Z-Dna Complex
pdb|1QBJ|B Chain B, Crystal Structure Of The Zalpha Z-Dna Complex
Length = 81
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/54 (22%), Positives = 27/54 (49%)
Query: 80 SLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNGILYADFKRLSLER 133
S+ E++I+ + EG A + ++ +E+N +LY+ K+ L++
Sbjct: 6 SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK 59
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 41 KDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQ 77
KD+ K K LSD+ + F K A + +L + I +Q
Sbjct: 6 KDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQ 42
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 26.2 bits (56), Expect = 2.8
Identities = 11/46 (23%), Positives = 23/46 (49%)
Query: 135 FKEAFEDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAINYIENMH 180
+K+A + L+ + ++F N+E+F K N + A++ H
Sbjct: 206 YKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAADKTALSTANKEH 251
>pdb|1AJ4| Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 41 KDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQ 77
KD+ K K LSD+ + F K A + +L + I +Q
Sbjct: 86 KDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQ 122
>pdb|3CTN| Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 41 KDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQ 77
KD+ K K LSD+ + F K A + +L + I +Q
Sbjct: 1 KDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQ 37
>pdb|1CJM|A Chain A, Human Sult1a3 With Sulfate Bound
Length = 295
Score = 25.8 bits (55), Expect = 3.7
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 41 KDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQKRSLKN 83
K+N K ++ +L + + P+E F + S M+K + N
Sbjct: 197 KENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKKNPMTN 239
>pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 25.4 bits (54), Expect = 4.8
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 13/40 (32%)
Query: 158 EFLKELNHYGYYELAINYIENMHEDSFIYDEFLRSLLEDA 197
E+ K LN YGY F++DE++R +L +A
Sbjct: 132 EYEKPLNVYGY-------------SKFLFDEYVRQILPEA 158
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
Length = 161
Score = 25.4 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 41 KDNQKAKVGALLSDIAKDFPKEAHSFYELYQSLIAMQ 77
KD+ K K LSD+ + F K A + +L + I +Q
Sbjct: 86 KDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQ 122
Score = 24.6 bits (52), Expect = 8.2
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 66 FYELYQSLIAMQKRSLKNQAEEQIINLIASFDEGLNQMAEKIDVQISQKSEELNGILYAD 125
F E ++ K K ++EE++ +L FD+ + ID+ EEL +L A
Sbjct: 74 FDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGY---IDL------EELKIMLQAT 124
Query: 126 FKRLSLERGFKEAFEDLMFSSRVIFDNKEDFYEFLK 161
+ ++ ++ E+LM D + D+ EFL+
Sbjct: 125 GETIT-----EDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 25.0 bits (53), Expect = 6.2
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 133 RGFKEAFED--LMFSSRV--IFDNKEDFYEFLKELNHYGYYELAINY-------IENMHE 181
RG A+ED + RV +FD KE F E LKE+ Y ++L +NY + + +
Sbjct: 131 RGIGPAYEDKVALRGLRVGDLFD-KETFAEKLKEVMEYHNFQL-VNYYKAEAVDYQKVLD 188
Query: 182 DSFIYDEFLRSLLED 196
D+ + L S++ D
Sbjct: 189 DTMAVADILTSMVVD 203
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 25.0 bits (53), Expect = 6.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 133 RGFKEAFEDLMFSSRV----IFDNKEDFYEFLKELNHYGYYELAINY-------IENMHE 181
RG A+ED + + +FD KE F E LKE+ Y ++L +NY + + +
Sbjct: 131 RGIGPAYEDKVARRGLRVGDLFD-KETFAEKLKEVMEYHNFQL-VNYYKAEAVDYQKVLD 188
Query: 182 DSFIYDEFLRSLLED 196
D+ + L S++ D
Sbjct: 189 DTMAVADILTSMVVD 203
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl- Imp, And Mg2+
Length = 431
Score = 25.0 bits (53), Expect = 6.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 133 RGFKEAFEDLMFSSRV----IFDNKEDFYEFLKELNHYGYYELAINY-------IENMHE 181
RG A+ED + + +FD KE F E LKE+ Y ++L +NY + + +
Sbjct: 131 RGIGPAYEDKVARRGLRVGDLFD-KETFAEKLKEVMEYHNFQL-VNYYKAEAVDYQKVLD 188
Query: 182 DSFIYDEFLRSLLED 196
D+ + L S++ D
Sbjct: 189 DTMAVADILTSMVVD 203
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 25.0 bits (53), Expect = 6.2
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 11/56 (19%)
Query: 86 EEQIINLIASFDEGL-----------NQMAEKIDVQISQKSEELNGILYADFKRLS 130
EE+I+ +A F L NQ+AEK +I E+ +L A ++L+
Sbjct: 10 EEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLA 65
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 25.0 bits (53), Expect = 6.2
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 11/56 (19%)
Query: 86 EEQIINLIASFDEGL-----------NQMAEKIDVQISQKSEELNGILYADFKRLS 130
EE+I+ +A F L NQ+AEK +I E+ +L A ++L+
Sbjct: 10 EEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLA 65
>pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
Length = 432
Score = 25.0 bits (53), Expect = 6.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 133 RGFKEAFEDLMFSSRV----IFDNKEDFYEFLKELNHYGYYELAINY-------IENMHE 181
RG A+ED + + +FD KE F E LKE+ Y ++L +NY + + +
Sbjct: 132 RGIGPAYEDKVARRGLRVGDLFD-KETFAEKLKEVMEYHNFQL-VNYYKAEAVDYQKVLD 189
Query: 182 DSFIYDEFLRSLLED 196
D+ + L S++ D
Sbjct: 190 DTMAVADILTSMVVD 204
>pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1GIM| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 100k (Ph6.5)
pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1NHT| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1SON| Adenylosuccinate Synthetase In Complex With The Natural Feedback
Inhibitor Amp
pdb|1SOO| Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1JUY| Refined Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Hydantocidin
5'-Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
pdb|1GIN| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 298k (Ph6.5).
pdb|1KSZ| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
Length = 431
Score = 25.0 bits (53), Expect = 6.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 133 RGFKEAFEDLMFSSRV----IFDNKEDFYEFLKELNHYGYYELAINY-------IENMHE 181
RG A+ED + + +FD KE F E LKE+ Y ++L +NY + + +
Sbjct: 131 RGIGPAYEDKVARRGLRVGDLFD-KETFAEKLKEVMEYHNFQL-VNYYKAEAVDYQKVLD 188
Query: 182 DSFIYDEFLRSLLED 196
D+ + L S++ D
Sbjct: 189 DTMAVADILTSMVVD 203
>pdb|1PSR|A Chain A, Human Psoriasin (S100a7)
pdb|1PSR|B Chain B, Human Psoriasin (S100a7)
pdb|2PSR| Human Psoriasin (S100a7) Ca2+ And Zn2+ Bound Form (Crystal Form
Ii)
pdb|3PSR|A Chain A, Human Psoriasin (S100a7) Ca2+ Bound Form (Crystal Form
I)
pdb|3PSR|B Chain B, Human Psoriasin (S100a7) Ca2+ Bound Form (Crystal Form
I)
Length = 100
Score = 24.6 bits (52), Expect = 8.2
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 13 LIKDGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVG-----ALLSDIAKDFPKEAH 64
++K+ F F A + ++V N+ K+ +LL DIA D+ K++H
Sbjct: 34 MMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSH 90
>pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 24.6 bits (52), Expect = 8.2
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 177 ENMHEDSFIYDEFLRSLLEDA 197
E+ +++F+++EF R L+DA
Sbjct: 368 ESFQDENFVFEEFARQNLKDA 388
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 24.6 bits (52), Expect = 8.2
Identities = 13/39 (33%), Positives = 20/39 (50%), Gaps = 3/39 (7%)
Query: 152 NKE---DFYEFLKELNHYGYYELAINYIENMHEDSFIYD 187
NKE D+Y+F+KE E+ + + + FIYD
Sbjct: 39 NKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYD 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,060,099
Number of Sequences: 13198
Number of extensions: 41397
Number of successful extensions: 158
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 34
length of query: 203
length of database: 2,899,336
effective HSP length: 84
effective length of query: 119
effective length of database: 1,790,704
effective search space: 213093776
effective search space used: 213093776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)