BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646108|ref|NP_208290.1| hypothetical protein
[Helicobacter pylori 26695]
(272 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile... 27 2.5
pdb|1GZL|A Chain A, Crystal Structure Of C14linkmidIQN17: A... 27 2.5
pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protea... 26 4.3
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 26 4.3
pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga M... 26 4.3
pdb|1PSR|A Chain A, Human Psoriasin (S100a7) >gi|4389154|pd... 26 5.6
pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 26 5.6
pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima 26 5.6
pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 26 5.6
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 26 5.6
pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon... 26 5.6
pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Sapor... 25 7.3
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crysta... 25 7.3
pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Str... 25 9.5
pdb|1FEP|A Chain A, Ferric Enterobactin Receptor 25 9.5
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular ... 25 9.5
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 26.9 bits (58), Expect = 2.5
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 102 HPKIYMFDNGKEKTSIIGSTNLTKG-----------GLENNFEVNTIFTEKKPLYYTQLN 150
HP + +E T I GST KG G NN V + +K ++
Sbjct: 168 HPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPG 227
Query: 151 AIYNSIKYADSLFTPNEEYLQNYNEV 176
+ Y DS TP++ ++++ EV
Sbjct: 228 LTATGVIYRDSNGTPHQAFVRSKGEV 253
>pdb|1GZL|A Chain A, Crystal Structure Of C14linkmidIQN17: A CROSS-Linked
Inhibitor Of Hiv-1 Entry Bound To The Gp41 Hydrophobic
Pocket
pdb|1GZL|B Chain B, Crystal Structure Of C14linkmidIQN17: A CROSS-Linked
Inhibitor Of Hiv-1 Entry Bound To The Gp41 Hydrophobic
Pocket
pdb|1CZQ|A Chain A, Crystal Structure Of The D10-P1IQN17 COMPLEX: A D-Peptide
Inhibitor Of Hiv-1 Entry Bound To The Gp41 Coiled-Coil
Pocket
Length = 46
Score = 26.9 bits (58), Expect = 2.5
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 5/43 (11%)
Query: 191 KSIQEKIKEIEKQEKLLPGTIPSIKAMIVEFIFACEKKGVKQV 233
K I++KI+EIE ++K + I IK ++ ++ G+KQ+
Sbjct: 4 KQIEDKIEEIESKQKKIENEIARIKKLLQLTVW-----GIKQL 41
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 26.2 bits (56), Expect = 4.3
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 19/81 (23%)
Query: 128 LENNFEVNTIFTEKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEVFSAIIKNEQKV 187
LE + T+ T+K+PL +SI +EE+LQ Y+E + N
Sbjct: 636 LEKPEDERTVETDKRPLV--------SSI---------HEEFLQMYDEAWKLARDNYWNE 678
Query: 188 SKDKSIQEKIKEIEKQEKLLP 208
+ K I E+I EK L+P
Sbjct: 679 AVAKEISERI--YEKYRNLVP 697
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 26.2 bits (56), Expect = 4.3
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 156 IKYADSLFTPNEEYLQNYNEVFSAIIKNEQKVSKD--------KSIQ---EKIKEIEKQE 204
IK + S E L+ N V S ++K +K+SKD KS Q K+KE+EK+E
Sbjct: 39 IKDSKSNLNKELETLREENRVKSDMLK--EKLSKDAENHKAYLKSHQVHRHKLKEMEKEE 96
Query: 205 KLL 207
LL
Sbjct: 97 PLL 99
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 26.2 bits (56), Expect = 4.3
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 13/87 (14%)
Query: 134 VNTIFTEKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEVFSAIIKNEQKVSKDKSI 193
++T F E + L T NA+YN +K EE +Q Y + IK I
Sbjct: 249 LDTSFEESERLIITHGNAVYNDLK---------EEEIQ-YRGLDGNTIKTTTAKKLSVII 298
Query: 194 QEKIKEIEKQEKLLPGTIPSIKAMIVE 220
+++EI + K ++A IVE
Sbjct: 299 HARLREIXSKSKKF---FREVEAKIVE 322
>pdb|1PSR|A Chain A, Human Psoriasin (S100a7)
pdb|1PSR|B Chain B, Human Psoriasin (S100a7)
pdb|2PSR| Human Psoriasin (S100a7) Ca2+ And Zn2+ Bound Form (Crystal Form
Ii)
pdb|3PSR|A Chain A, Human Psoriasin (S100a7) Ca2+ Bound Form (Crystal Form I)
pdb|3PSR|B Chain B, Human Psoriasin (S100a7) Ca2+ Bound Form (Crystal Form I)
Length = 100
Score = 25.8 bits (55), Expect = 5.6
Identities = 12/42 (28%), Positives = 22/42 (51%), Gaps = 2/42 (4%)
Query: 208 PGTIPSIKAMIVEFIFACEKKGVKQVALQDIYQALEERIKKK 249
P + +K F+ AC+KKG +A D+++ ++ KK
Sbjct: 29 PSLLTMMKENFPNFLSACDKKGTNYLA--DVFEKKDKNEDKK 68
>pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain
Length = 424
Score = 25.8 bits (55), Expect = 5.6
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 1/55 (1%)
Query: 140 EKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEV-FSAIIKNEQKVSKDKSI 193
+ KPL L I N I Y P EE+ N V + +I N +V + K I
Sbjct: 99 KSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGI 153
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
Length = 419
Score = 25.8 bits (55), Expect = 5.6
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 13/87 (14%)
Query: 134 VNTIFTEKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEVFSAIIKNEQKVSKDKSI 193
++T F E + L T NA+YN +K EE +Q Y + IK I
Sbjct: 249 LDTSFEESERLIITHGNAVYNDLK---------EEEIQ-YRGLDGNTIKTTTAKKLSVII 298
Query: 194 QEKIKEIEKQEKLLPGTIPSIKAMIVE 220
+++EI + K ++A IVE
Sbjct: 299 HARLREIMSKSKKF---FREVEAKIVE 322
>pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain With
Synaptobrevin-Ii Bound
Length = 425
Score = 25.8 bits (55), Expect = 5.6
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 1/55 (1%)
Query: 140 EKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEV-FSAIIKNEQKVSKDKSI 193
+ KPL L I N I Y P EE+ N V + +I N +V + K I
Sbjct: 99 KSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGI 153
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 25.8 bits (55), Expect = 5.6
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 1/55 (1%)
Query: 140 EKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEV-FSAIIKNEQKVSKDKSI 193
+ KPL L I N I Y P EE+ N V + +I N +V + K I
Sbjct: 99 KSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGI 153
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 25.8 bits (55), Expect = 5.6
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 29 AVAFLKYSGVEVIQDTLIDSLEKGAEFEIIVGLDF------KTTDSKSIRFLLDLNKTYK 82
AV+ GV+V ++ + + GA++ I + + T+SK + ++DLN + K
Sbjct: 193 AVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEK 252
Query: 83 KLRFY 87
L Y
Sbjct: 253 TLSVY 257
>pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Saporin So6, A Ribosome
Inactivating Protein From Saponaria Officinalis
Length = 253
Score = 25.4 bits (54), Expect = 7.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 130 NNFEVNTIFTEKKPLYYTQLNAIYNSIKYADSLFTPNEEYLQNYNEVFSAIIKNEQKVSK 189
+N VN + K + +L A++ T N++ L+ Y E + +I KN Q
Sbjct: 80 DNTNVNRAYYFKSEITSAELTALFPEAT------TANQKALE-YTEDYQSIEKNAQITQG 132
Query: 190 DKSIQE 195
DKS +E
Sbjct: 133 DKSRKE 138
>pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 418
Score = 25.4 bits (54), Expect = 7.3
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 186 KVSKDKSIQEKIKEIEKQEKLLPGTIPSIKAMIVEFIFACEKKGVKQVALQDIYQALEER 245
K++ + +++ E++ Q + ++ + A G+++++ +DI+ A E R
Sbjct: 6 KLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELAKILSGLEKISEEDIHTANERR 65
Query: 246 IKKKSGD 252
+K+ GD
Sbjct: 66 LKELIGD 72
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 25.0 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 177 FSAIIKNEQKVSKDKSIQEKIKEIEKQE 204
+ AII+ + + D SIQ++ KE+ K++
Sbjct: 269 YMAIIEGAKCIKGDSSIQKRWKELSKED 296
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 25.0 bits (53), Expect = 9.5
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 11 NYPKVITEGLRNSLNTHIAVAFLKYSGVEVIQDTLIDSLEKGAEFEIIVGLDFKTTDSKS 70
N PK + EGL SLN ++ + + + ++ G II +T S
Sbjct: 557 NVPKAVVEGLEGSLNVPVSETVXWTNNITYXLKS--ENKTTGDRLSIIPEYTLNSTLSWQ 614
Query: 71 IRFLLDLNKTYKKLRFYCYGDKENNKTDIVFHPKIYMFDNGKEKTSIIG---STNLTK-- 125
R L T F YG ++ K + P + SI+G + ++TK
Sbjct: 615 AREDLSXQTT-----FTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSATWDVTKNV 669
Query: 126 ---GGLENNFE 133
GG++N F+
Sbjct: 670 SLTGGVDNLFD 680
>pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
Length = 957
Score = 25.0 bits (53), Expect = 9.5
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
Query: 207 LPGTIPSIKAMIVEFIFACEKKGVKQVALQDIYQALEERIKKKSGDTNTKAILLGTLSGA 266
LPGT + V F + KGV L + L +++K+K +A+ L + S +
Sbjct: 463 LPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKG--AIRRALFLYSRSPS 520
Query: 267 NSTTM 271
+S M
Sbjct: 521 HSKNM 525
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,488,627
Number of Sequences: 13198
Number of extensions: 62168
Number of successful extensions: 212
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 17
length of query: 272
length of database: 2,899,336
effective HSP length: 87
effective length of query: 185
effective length of database: 1,751,110
effective search space: 323955350
effective search space used: 323955350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)