BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646110|ref|NP_208292.1| outer membrane protein
(omp32) [Helicobacter pylori 26695]
(388 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylor... 30 0.61
pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylor... 30 0.61
pdb|1LPP| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) C... 28 2.3
pdb|1CRL| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase... 28 2.3
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin >... 27 3.9
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin A... 27 3.9
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhod... 27 3.9
pdb|2SCU|A Chain A, A Detailed Description Of The Structure... 27 5.1
pdb|1SCU|A Chain A, Succinyl-Coa Synthetase (Succinate-Coa ... 27 5.1
pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Ps... 27 5.1
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E... 27 5.1
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 29.6 bits (65), Expect = 0.61
Identities = 16/52 (30%), Positives = 22/52 (41%)
Query: 334 LPNYFFKGSTTIRAKKQGPLENGQPTTITGAETNFSLTQTLRRQYSMYLRYV 385
+P F G TT+ GP + TTIT N +YSM L ++
Sbjct: 145 IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFL 196
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 29.6 bits (65), Expect = 0.61
Identities = 16/52 (30%), Positives = 22/52 (41%)
Query: 334 LPNYFFKGSTTIRAKKQGPLENGQPTTITGAETNFSLTQTLRRQYSMYLRYV 385
+P F G TT+ GP + TTIT N +YSM L ++
Sbjct: 145 IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFL 196
>pdb|1LPP| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
Hexadecanesulfonate
pdb|1LPN| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
Dodecanesulfonate
pdb|1LPM| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
(1r)-Menthyl Hexyl Phosphonate
pdb|1LPO| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
Hexadecanesulfonate
pdb|1LPS| Lipase (E.C.3.1.1.3) Complexed With (1s)-Menthyl Hexyl Phosphonate
Length = 549
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/71 (29%), Positives = 27/71 (37%), Gaps = 14/71 (19%)
Query: 230 GFFLGVNFAGNTWTNNRVGYFKDGYVYGVNTDADAYMTNADGTITCGDTTPASCNVGINP 289
G F G + T YFK +V+ + + D MT G IT G
Sbjct: 357 GTFFGTSSLNVTTDAQAREYFKQSFVHASDAEIDTLMTAYPGDITQG------------- 403
Query: 290 NSVYTTGKLNA 300
S + TG LNA
Sbjct: 404 -SPFDTGILNA 413
>pdb|1CRL| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TRH| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
Length = 534
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/71 (29%), Positives = 27/71 (37%), Gaps = 14/71 (19%)
Query: 230 GFFLGVNFAGNTWTNNRVGYFKDGYVYGVNTDADAYMTNADGTITCGDTTPASCNVGINP 289
G F G + T YFK +V+ + + D MT G IT G
Sbjct: 342 GTFFGTSSLNVTTDAQAREYFKQSFVHASDAEIDTLMTAYPGDITQG------------- 388
Query: 290 NSVYTTGKLNA 300
S + TG LNA
Sbjct: 389 -SPFDTGILNA 398
>pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
Length = 348
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 309 FLVNVGIRTNIFEHHGIEFGIKIPTLPNYFFKGS 342
+L G+ IF H G +FG T+P +F K S
Sbjct: 265 WLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 298
>pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
Length = 349
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 309 FLVNVGIRTNIFEHHGIEFGIKIPTLPNYFFKGS 342
+L G+ IF H G +FG T+P +F K S
Sbjct: 266 WLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 299
>pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
Length = 348
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 309 FLVNVGIRTNIFEHHGIEFGIKIPTLPNYFFKGS 342
+L G+ IF H G +FG T+P +F K S
Sbjct: 265 WLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 298
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
Length = 288
Score = 26.6 bits (57), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 276 GDTTPASCNVGINPNSVYTTGKL 298
G TP C +GI P ++ GK+
Sbjct: 125 GVITPGECKIGIQPGHIHKPGKV 147
>pdb|1SCU|A Chain A, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1SCU|D Chain D, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 26.6 bits (57), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 276 GDTTPASCNVGINPNSVYTTGKL 298
G TP C +GI P ++ GK+
Sbjct: 125 GVITPGECKIGIQPGHIHKPGKV 147
>pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Pseudoacacia.
pdb|1FNZ|A Chain A, A Bark Lectin From Robinia Pseudoacacia In Complex With N-
Acetylgalactosamine
Length = 237
Score = 26.6 bits (57), Expect = 5.1
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 4/46 (8%)
Query: 247 VGYFKDGYVYGVNTDADAYMTNADGTITCGDTTPASCNVGINPNSV 292
+G FKDGY N D T + GD P ++GIN NS+
Sbjct: 107 LGIFKDGYF---NKSNQIVAVEFD-TFSNGDWDPKGRHLGINVNSI 148
>pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
Length = 286
Score = 26.6 bits (57), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 276 GDTTPASCNVGINPNSVYTTGKL 298
G TP C +GI P ++ GK+
Sbjct: 125 GVITPGECKIGIQPGHIHKPGKV 147
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,616,205
Number of Sequences: 13198
Number of extensions: 126781
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 11
length of query: 388
length of database: 2,899,336
effective HSP length: 90
effective length of query: 298
effective length of database: 1,711,516
effective search space: 510031768
effective search space used: 510031768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)