BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644781|ref|NP_206951.1| hypothetical protein
[Helicobacter pylori 26695]
(287 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GW5|S Chain S, Ap2 Clathrin Adaptor Core 27 2.7
pdb|1LFW|A Chain A, Crystal Structure Of Pepv 27 3.5
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 27 3.5
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 26 4.6
pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Tran... 26 6.0
pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Tran... 26 6.0
>pdb|1GW5|S Chain S, Ap2 Clathrin Adaptor Core
Length = 142
Score = 26.9 bits (58), Expect = 2.7
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 4/35 (11%)
Query: 124 YMNFLDIEKAVLEEKVHAGVLI----HESILDFHN 154
YM F D EK L E+VHA V + H + ++F N
Sbjct: 20 YMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRN 54
>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
Length = 470
Score = 26.6 bits (57), Expect = 3.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 73 PTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKH 119
P+ T++ YG L+K+ G K KK L TN + Y KH
Sbjct: 123 PSLTAY---YGMLLLKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKH 166
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 26.6 bits (57), Expect = 3.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 141 AGVLIHESILDFHNELEVEKELWDVWKELIEVDLPL 176
AG++ H ++L+F E++ ++ L D + L VD+ L
Sbjct: 164 AGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIIL 199
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 26.2 bits (56), Expect = 4.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 141 AGVLIHESILDFHNELEVEKELWDVWKELIEVDLPL 176
AG++ H ++L+F E++ ++ L D + L VD+ L
Sbjct: 375 AGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIIL 410
>pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 426
Score = 25.8 bits (55), Expect = 6.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 117 YKHARITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVW 166
Y + T+ N + + V+++ ++I I FH L VE+E+W+ W
Sbjct: 348 YAKVKNTHTNGIRLLAQVVQKIGKEALVIWGRIPKFH--LPVEREIWEQW 395
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 25.8 bits (55), Expect = 6.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 117 YKHARITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVW 166
Y + T+ N + + V+++ ++I I FH L VE+E+W+ W
Sbjct: 353 YAKVKNTHTNGIRLLAQVVQKIGKEALVIWGRIPKFH--LPVEREIWEQW 400
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,587,775
Number of Sequences: 13198
Number of extensions: 60942
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 6
length of query: 287
length of database: 2,899,336
effective HSP length: 87
effective length of query: 200
effective length of database: 1,751,110
effective search space: 350222000
effective search space used: 350222000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)