BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646113|ref|NP_208295.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (238 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2ADM|A  Chain A, Adenine-N6-Dna-Methyltransferase Taqi >...    28  1.2
pdb|1AQJ|B  Chain B, Structure Of Adenine-N6-Dna-Methyltrans...    28  1.2
pdb|1G38|A  Chain A, Adenine-Specific Methyltransferase M. T...    28  1.2
pdb|1F3L|A  Chain A, Crystal Structure Of The Conserved Core...    26  3.6
pdb|1DUS|A  Chain A, Mj0882-A Hypothetical Protein From M. J...    26  4.7
pdb|1AK6|    Destrin, Nmr, Minimized Average Structure >gi|2...    25  6.1

>pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
 pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
 pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 13/91 (14%)

Query: 82  PNAQVFEGDFLDFNPPILYDIIVCNPPFYALG-----------SIKSKI-KGHARHQSEL 129
           P A+    DFL + P   +D+I+ NPP+  +G           ++K    K  +  + + 
Sbjct: 81  PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKY 140

Query: 130 D-FASLVAKVKKCLKPKGYFIFCYEALSLCL 159
           + + + + K  + LKP G  +F   A  L L
Sbjct: 141 NLYGAFLEKAVRLLKPGGVLVFVVPATWLVL 171



>pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 13/91 (14%)

Query: 82  PNAQVFEGDFLDFNPPILYDIIVCNPPFYALG-----------SIKSKI-KGHARHQSEL 129
           P A+    DFL + P   +D+I+ NPP+  +G           ++K    K  +  + + 
Sbjct: 81  PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKY 140

Query: 130 D-FASLVAKVKKCLKPKGYFIFCYEALSLCL 159
           + + + + K  + LKP G  +F   A  L L
Sbjct: 141 NLYGAFLEKAVRLLKPGGVLVFVVPATWLVL 171



>pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
 pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
          Length = 393

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 13/91 (14%)

Query: 82  PNAQVFEGDFLDFNPPILYDIIVCNPPFYALG-----------SIKSKI-KGHARHQSEL 129
           P A+    DFL + P   +D+I+ NPP+  +G           ++K    K  +  + + 
Sbjct: 61  PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKY 120

Query: 130 D-FASLVAKVKKCLKPKGYFIFCYEALSLCL 159
           + + + + K  + LKP G  +F   A  L L
Sbjct: 121 NLYGAFLEKAVRLLKPGGVLVFVVPATWLVL 151



>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
          Arginine Methyltransferase Prmt3
          Length = 321

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (52%)

Query: 27 FSRPFIKNSGAILDIGSGCGILGLLCAR 54
          +  P I     +LD+G G GIL +  A+
Sbjct: 38 YQNPHIFKDKVVLDVGCGTGILSMFAAK 65



>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
          Length = 194

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 38  ILDIGSGCGILGLLCARDNPLAIVHLVEKD-NKMAFCSQKNALKFPN-----AQVFEGDF 91
           ILD+G G G++G+  A +    +      D N+ A    K  +K  N      +V   D 
Sbjct: 56  ILDLGCGYGVIGIALADE----VKSTTXADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 92  LDFNPPILYDIIVCNPPFYA 111
            +      Y+ I+ NPP  A
Sbjct: 112 YENVKDRKYNKIITNPPIRA 131



>pdb|1AK6|   Destrin, Nmr, Minimized Average Structure
 pdb|1AK7|   Destrin, Nmr, 20 Structures
          Length = 174

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 137 KVKKCLKP------KGYFIFCYEALSLCLVIE-------GLKSVKLTLETLRFVQSFKDK 183
           KV+KC  P      K   IFC  A   C+++E       G   V +T     FV    +K
Sbjct: 28  KVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEK 87

Query: 184 NAHLMLGAARNNSKSALK 201
           +    L  A   +K + K
Sbjct: 88  DCRYALYDASFETKESRK 105



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.323    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,329,301
Number of Sequences: 13198
Number of extensions: 50592
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 2,899,336
effective HSP length: 85
effective length of query: 153
effective length of database: 1,777,506
effective search space: 271958418
effective search space used: 271958418
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)