BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646114|ref|NP_208296.1| riboflavin biosynthesis
protein (ribG) [Helicobacter pylori 26695]
(344 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate ... 27 4.4
pdb|1F6D|A Chain A, The Structure Of Udp-N-Acetylglucosamin... 26 5.8
pdb|2PSG| Pepsinogen >gi|230912|pdb|3PSG| Pepsinogen 26 5.8
pdb|3CYR| Cytochrome C3 From Desulfovibrio Desulfuricans ... 26 7.6
pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolas... 25 9.9
pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like ... 25 9.9
>pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With
3'-Azido-3'-Deoxythymidine Monophosphate (Azt-Mp)
pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With
3'-Azido-3'-Deoxythymidine Monophosphate (Azt-Mp)
Length = 216
Score = 26.6 bits (57), Expect = 4.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 100 LITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGGL 141
LI +E + GKT C+ L + L+P ++ E + GGL
Sbjct: 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGL 48
>pdb|1F6D|A Chain A, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli.
pdb|1F6D|D Chain D, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli.
pdb|1F6D|B Chain B, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli.
pdb|1F6D|C Chain C, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli
Length = 376
Score = 26.2 bits (56), Expect = 5.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 107 NSYGKTPACSELLEILKPKRV 127
N YG ACS +LE LK R+
Sbjct: 354 NPYGDGQACSRILEALKNNRI 374
>pdb|2PSG| Pepsinogen
pdb|3PSG| Pepsinogen
Length = 370
Score = 26.2 bits (56), Expect = 5.8
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 64 ILRPSLKNDLEKLEDPKTLSDFLKTHHDNA----FTDCVFLITLEPCNSY 109
+ + SL+ +L ++D K L DFLKTH N F + LI EP +Y
Sbjct: 7 VRKKSLRQNL--IKDGK-LKDFLKTHKHNPASKYFPEAAALIGDEPLENY 53
>pdb|3CYR| Cytochrome C3 From Desulfovibrio Desulfuricans Atcc 27774p
Length = 107
Score = 25.8 bits (55), Expect = 7.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 35 KNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDL 73
K + L H K + H LA S + +P LK DL
Sbjct: 59 KGEKSLYYVVHAKGELKHTSCLACHSKVVAEKPELKKDL 97
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase
pdb|1F05|B Chain B, Crystal Structure Of Human Transaldolase
Length = 337
Score = 25.4 bits (54), Expect = 9.9
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 248 SKRSIDPNSKVFSAPNRLVNTFHDP---KD---LPLEKGFNFIEGGWELFESLRDKIDAL 301
++ S D ++ V A RL+ + + KD + L + I+ G EL E +
Sbjct: 109 ARLSFDKDAMVARA-RRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMT 167
Query: 302 LLHSHASMIGEAFKALALKTPFKGRLL 328
LL S A + A + L +PF GR+L
Sbjct: 168 LLFSFAQAVACAEAGVTLISPFVGRIL 194
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 25.4 bits (54), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 244 IAILSKRSIDPNSKVFSAPNRLVNTFHD---PKDLPLEKGF 281
+ I+++ +D N F P + V F+D K L EKG+
Sbjct: 111 VTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGW 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,930,377
Number of Sequences: 13198
Number of extensions: 74509
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 6
length of query: 344
length of database: 2,899,336
effective HSP length: 89
effective length of query: 255
effective length of database: 1,724,714
effective search space: 439802070
effective search space used: 439802070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)