BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646116|ref|NP_208298.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
(385 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reducta... 34 0.032
pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Gua... 28 1.3
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Ki... 28 1.3
pdb|1IXM|B Chain B, Crystal Structure Of Spoob From Bacillu... 27 5.1
pdb|1F51|B Chain B, A Transient Interaction Between Two Pho... 27 5.1
pdb|1MRH| Alpha-Momorcharin Complexed With Formycin >gi|9... 26 6.6
pdb|1MOM| Momordin (E.C.3.2.2.22) 26 6.6
pdb|1AHC| Alpha-Momorcharin (E.C.3.2.2.22) (Type I Riboso... 26 6.6
pdb|1MRG| Alpha-Momorcharin Complexed With Adenine 26 6.6
>pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|B Chain B, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|C Chain C, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|D Chain D, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|E Chain E, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|F Chain F, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|G Chain G, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|H Chain H, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5L|A Chain A, Apo Saccharopine Reductase From Magnaporthe Grisea
pdb|1E5L|B Chain B, Apo Saccharopine Reductase From Magnaporthe Grisea
pdb|1FF9|A Chain A, Apo Saccharopine Reductase
Length = 450
Score = 33.9 bits (76), Expect = 0.032
Identities = 26/92 (28%), Positives = 48/92 (51%), Gaps = 13/92 (14%)
Query: 46 VDADDTQALVALIQKYKPKVVINVALPYQ-DLTIMQACLETKTHYIDTANYEHPDLAKFE 104
+D +D AL A + K+ +VI++ +PY T++++ + K H + T +Y P + +
Sbjct: 54 LDVNDDAALDAEVAKHD--LVISL-IPYTFHATVIKSAIRQKKHVV-TTSYVSPAMMEL- 108
Query: 105 YKEQWAFDRAYKEVGILGVLGAGFDPGVTNAY 136
D+A K+ GI + G DPG+ + Y
Sbjct: 109 -------DQAAKDAGITVMNEIGLDPGIDHLY 133
>pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Guanosine
Monophosphate
Length = 187
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 205 PQIGEM---DSYLLYHEELESLVKNIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEI 261
P+ GE+ D + +E +S++KN + + A+F + + + +K + G I +I
Sbjct: 41 PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDI 100
Query: 262 EHQGVKIV 269
+ QGVK V
Sbjct: 101 DMQGVKSV 108
>pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
Length = 186
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 205 PQIGEM---DSYLLYHEELESLVKNIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEI 261
P+ GE+ D + +E +S++KN + + A+F + + + +K + G I +I
Sbjct: 40 PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDI 99
Query: 262 EHQGVKIV 269
+ QGVK V
Sbjct: 100 DMQGVKSV 107
>pdb|1IXM|B Chain B, Crystal Structure Of Spoob From Bacillus Subtilis
pdb|1IXM|A Chain A, Crystal Structure Of Spoob From Bacillus Subtilis
Length = 192
Score = 26.6 bits (57), Expect = 5.1
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 2/68 (2%)
Query: 204 YPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEH 263
Y ++ EM ++ + ES + N+K A F+TF N+ TH LE + IK++
Sbjct: 48 YDRVFEMIEEMVIDAKHESKLSNLKTPHLAFDFLTF--NWKTHYMTLEYEVLGEIKDLSA 105
Query: 264 QGVKIVPI 271
K+ +
Sbjct: 106 YDQKLAKL 113
>pdb|1F51|B Chain B, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|A Chain A, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|D Chain D, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|C Chain C, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 182
Score = 26.6 bits (57), Expect = 5.1
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 2/68 (2%)
Query: 204 YPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEH 263
Y ++ EM ++ + ES + N+K A F+TF N+ TH LE + IK++
Sbjct: 38 YDRVFEMIEEMVIDAKHESKLSNLKTPHLAFDFLTF--NWKTHYMTLEYEVLGEIKDLSA 95
Query: 264 QGVKIVPI 271
K+ +
Sbjct: 96 YDQKLAKL 103
>pdb|1MRH| Alpha-Momorcharin Complexed With Formycin
pdb|1F8Q|A Chain A, Crystal Structure Of Alpha-Momorcharin In Acetonitrile-
Water Mixture
pdb|1MRI| Alpha-Momorcharin
Length = 263
Score = 26.2 bits (56), Expect = 6.6
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 13/64 (20%)
Query: 62 KPKVVINVALPYQDLTIMQACLETKTHYIDTAN--------YEHPDLAKFEYKEQWAFDR 113
KP+ I + LP D + + T HY TA + A+F+Y EQ +R
Sbjct: 120 KPREKIPIGLPALD-----SAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQER 174
Query: 114 AYKE 117
AY++
Sbjct: 175 AYRD 178
>pdb|1MOM| Momordin (E.C.3.2.2.22)
Length = 246
Score = 26.2 bits (56), Expect = 6.6
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 13/64 (20%)
Query: 62 KPKVVINVALPYQDLTIMQACLETKTHYIDTAN--------YEHPDLAKFEYKEQWAFDR 113
KP+ I + LP D + + T HY TA + A+F+Y EQ +R
Sbjct: 120 KPREKIPIGLPALD-----SAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQER 174
Query: 114 AYKE 117
AY++
Sbjct: 175 AYRD 178
>pdb|1AHC| Alpha-Momorcharin (E.C.3.2.2.22) (Type I Ribosome- Inactivating
Protein)
pdb|1AHA| Alpha-Momorcharin (E.C.3.2.2.22) Complexed With Adenine
pdb|1AHB| Alpha-Momorcharin (E.C.3.2.2.22) Complexed With Formycin
5'-Monophosphate
Length = 246
Score = 26.2 bits (56), Expect = 6.6
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 13/64 (20%)
Query: 62 KPKVVINVALPYQDLTIMQACLETKTHYIDTAN--------YEHPDLAKFEYKEQWAFDR 113
KP+ I + LP D + + T HY TA + A+F+Y EQ +R
Sbjct: 120 KPREKIPIGLPALD-----SAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQER 174
Query: 114 AYKE 117
AY++
Sbjct: 175 AYRD 178
>pdb|1MRG| Alpha-Momorcharin Complexed With Adenine
Length = 263
Score = 26.2 bits (56), Expect = 6.6
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 13/64 (20%)
Query: 62 KPKVVINVALPYQDLTIMQACLETKTHYIDTAN--------YEHPDLAKFEYKEQWAFDR 113
KP+ I + LP D + + T HY TA + A+F+Y EQ +R
Sbjct: 120 KPREKIPIGLPALD-----SAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQER 174
Query: 114 AYKE 117
AY++
Sbjct: 175 AYRD 178
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,402,078
Number of Sequences: 13198
Number of extensions: 107403
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 17
length of query: 385
length of database: 2,899,336
effective HSP length: 90
effective length of query: 295
effective length of database: 1,711,516
effective search space: 504897220
effective search space used: 504897220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)