BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646118|ref|NP_208300.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(262 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GV0|A Chain A, Structural Basis For Thermophilic Prote... 30 0.28
pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Prote... 30 0.28
pdb|1GV1|A Chain A, Structural Basis For Thermophilic Prote... 28 1.4
pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mito... 26 4.1
pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogen... 26 4.1
pdb|1JKU|A Chain A, Crystal Structure Of Manganese Catalase... 25 9.1
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 30.0 bits (66), Expect = 0.28
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 7/44 (15%)
Query: 80 MDITKIGSGGIGATNVLRALQSKGVSNAKQMALLVLILDLFKGM 123
M IT IG+G +GAT R + KQ+A +++LD+ +G+
Sbjct: 1 MKITVIGAGNVGATTAFRLAE-------KQLARELVLLDVVEGI 37
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 30.0 bits (66), Expect = 0.28
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 7/44 (15%)
Query: 80 MDITKIGSGGIGATNVLRALQSKGVSNAKQMALLVLILDLFKGM 123
M IT IG+G +GAT R + KQ+A +++LD+ +G+
Sbjct: 1 MKITVIGAGNVGATTAFRLAE-------KQLARELVLLDVVEGI 37
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 27.7 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 80 MDITKIGSGGIGATNVLRALQSKGVSNAKQMALLVLILDLFKGM 123
M IT IG+G +GAT R K++A +++LD+ +G+
Sbjct: 1 MKITVIGAGNVGATTAFRIAD-------KKLARELVLLDVVEGI 37
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 26.2 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 21/35 (59%), Gaps = 3/35 (8%)
Query: 225 ILKEVGTQTPMVLIFIFTLIKHAG---NIFNLLAG 256
++ +V QTP+ +++ LIK AG + N++ G
Sbjct: 188 VVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPG 222
>pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
Length = 494
Score = 26.2 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 21/35 (59%), Gaps = 3/35 (8%)
Query: 225 ILKEVGTQTPMVLIFIFTLIKHAG---NIFNLLAG 256
++ +V QTP+ +++ LIK AG + N++ G
Sbjct: 183 VVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPG 217
>pdb|1JKU|A Chain A, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum
pdb|1JKU|B Chain B, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum
pdb|1JKU|C Chain C, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum
pdb|1JKU|D Chain D, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum
pdb|1JKU|E Chain E, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum
pdb|1JKU|F Chain F, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum
pdb|1JKV|A Chain A, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum Comlexed With Azide
pdb|1JKV|B Chain B, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum Comlexed With Azide
pdb|1JKV|C Chain C, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum Comlexed With Azide
pdb|1JKV|D Chain D, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum Comlexed With Azide
pdb|1JKV|E Chain E, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum Comlexed With Azide
pdb|1JKV|F Chain F, Crystal Structure Of Manganese Catalase From
Lactobacillus Plantarum Comlexed With Azide
Length = 266
Score = 25.0 bits (53), Expect = 9.1
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 38 FERVFMESVLNFLTNINVIFTLLGYLIGGIPFG 70
++ + +++ + ++ +I T++GYL+ PFG
Sbjct: 55 YKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFG 87
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.329 0.146 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,322,120
Number of Sequences: 13198
Number of extensions: 48735
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 6
length of query: 262
length of database: 2,899,336
effective HSP length: 86
effective length of query: 176
effective length of database: 1,764,308
effective search space: 310518208
effective search space used: 310518208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)