BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646120|ref|NP_208302.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r 23 4.8
pdb|1BOB| Histone Acetyltransferase Hat1 From Saccharomyc... 23 4.8
pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin 23 4.8
pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r 23 4.8
pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r 23 4.8
pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase... 23 6.3
pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase... 23 6.3
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 FSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPH 40
FSL+ L VLKA N + PL + FL+L H
Sbjct: 16 FSLYKQL-VLKAPDKNVIFSPLSISTALAFLSLGAH 50
>pdb|1BOB| Histone Acetyltransferase Hat1 From Saccharomyces Cerevisiae In
Complex With Acetyl Coenzyme A
Length = 320
Score = 23.1 bits (48), Expect = 4.8
Identities = 8/26 (30%), Positives = 19/26 (72%)
Query: 66 EERQSNQPSDIFRQNAEINVSSQTFL 91
EER+++ SD+F + +E +++ + F+
Sbjct: 110 EERKTHNLSDVFEKVSEYSLNGEEFV 135
>pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin
Length = 360
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 FSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPH 40
FSL+ L VLKA N + PL + FL+L H
Sbjct: 35 FSLYKQL-VLKAPDKNVIFSPLSISTALAFLSLGAH 69
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 FSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPH 40
FSL+ L VLKA N + PL + FL+L H
Sbjct: 16 FSLYKQL-VLKAPDKNVIFSPLSISTALAFLSLGAH 50
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 FSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPH 40
FSL+ L VLKA N + PL + FL+L H
Sbjct: 16 FSLYKQL-VLKAPDKNVIFSPLSISTALAFLSLGAH 50
>pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|B Chain B, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|C Chain C, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex
With Heme
Length = 267
Score = 22.7 bits (47), Expect = 6.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 14 LKANPINPLLEPLYFP 29
++ N NP+ PLYFP
Sbjct: 65 IERNKQNPVYAPLYFP 80
>pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex
With Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l.
pdb|1DVG|B Chain B, Crystal Structure Of Rat Heme Oxygenase-1 In Complex
With Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l
Length = 267
Score = 22.7 bits (47), Expect = 6.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 14 LKANPINPLLEPLYFP 29
++ N NP+ PLYFP
Sbjct: 65 IERNKQNPVYAPLYFP 80
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,454
Number of Sequences: 13198
Number of extensions: 18018
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 7
length of query: 108
length of database: 2,899,336
effective HSP length: 84
effective length of query: 24
effective length of database: 1,790,704
effective search space: 42976896
effective search space used: 42976896
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)