BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646121|ref|NP_208303.1| iron-regulated outer
membrane protein (frpB) [Helicobacter pylori 26695]
(877 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1VNS| Recombinant Apo-Chloroperoxidase From Curvulari... 33 0.18
pdb|1IDU|A Chain A, Crystal Structure Of The Peroxide Form ... 33 0.18
pdb|1VNG| Chloroperoxidase From The Fungus Curvularia Ina... 33 0.18
pdb|1VNH| Chloroperoxidase From The Fungus Curvularia Ina... 33 0.18
pdb|1VNE| Chloroperoxidase From The Fungus Curvularia Ina... 33 0.18
pdb|1VNF| Chloroperoxidase From The Fungus Curvularia Ina... 33 0.18
pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 30 1.2
pdb|1LPP| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) C... 30 1.2
pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 30 1.2
pdb|1CRL| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase... 30 1.2
pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 30 1.2
pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Com... 28 3.4
pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acy... 28 3.4
pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb P... 28 4.4
pdb|1HQZ|1 Chain 1, Cofilin Homology Domain Of A Yeast Acti... 28 4.4
pdb|1CGX| Cyclomaltodextrin Glucanotransferase (Cgtase) (... 28 4.4
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 28 5.8
pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Diki... 28 5.8
pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophil... 28 5.8
pdb|1DIK| Pyruvate Phosphate Dikinase 28 5.8
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 28 5.8
pdb|1CYG| Cyclodextrin Glucanotransferase (E.C.2.4.1.19) ... 28 5.8
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 28 5.8
pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Met... 28 5.8
pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodext... 27 7.5
pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hyd... 27 7.5
pdb|1CGV| Cyclomaltodextrin Glucanotransferase (E.C.2.4.1... 27 7.5
pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase C... 27 7.5
pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate... 27 9.8
pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a ... 27 9.8
pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) 27 9.8
pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodext... 27 9.8
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans... 27 9.8
pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase ... 27 9.8
pdb|6CGT| Hoxa Complex Of Cyclodextrin Glycosyltransferas... 27 9.8
pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodext... 27 9.8
pdb|1CDG| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)... 27 9.8
pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase ... 27 9.8
pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From... 27 9.8
pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase C... 27 9.8
>pdb|1VNS| Recombinant Apo-Chloroperoxidase From Curvularia Inaequalis
pdb|1VNI| Chloroperoxidase From The Fungus Curvularia Inaequalis:
Recombinant Holo-Chloroperoxidase
pdb|1VNC| Chloroperoxidase From The Fungus Curvularia Inaequalis
pdb|1IDQ|A Chain A, Crystal Structure Of Native Vanadium-Containing
Chloroperoxidase From Curvularia Inaequalis
Length = 609
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 511 IDPNDPNGPGLPYRHYY 527
+DPN+PNGP +P+R Y+
Sbjct: 206 VDPNNPNGPKMPFRQYH 222
>pdb|1IDU|A Chain A, Crystal Structure Of The Peroxide Form Of The Vanadium-
Containing Chloroperoxidase From Curvularia Inaequalis
Length = 609
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 511 IDPNDPNGPGLPYRHYY 527
+DPN+PNGP +P+R Y+
Sbjct: 206 VDPNNPNGPKMPFRQYH 222
>pdb|1VNG| Chloroperoxidase From The Fungus Curvularia Inaequalis: Mutant
H404a
Length = 609
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 511 IDPNDPNGPGLPYRHYY 527
+DPN+PNGP +P+R Y+
Sbjct: 206 VDPNNPNGPKMPFRQYH 222
>pdb|1VNH| Chloroperoxidase From The Fungus Curvularia Inaequalis: Mutant
H496a
Length = 609
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 511 IDPNDPNGPGLPYRHYY 527
+DPN+PNGP +P+R Y+
Sbjct: 206 VDPNNPNGPKMPFRQYH 222
>pdb|1VNE| Chloroperoxidase From The Fungus Curvularia Inaequalis: Mutant
D292a
Length = 609
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 511 IDPNDPNGPGLPYRHYY 527
+DPN+PNGP +P+R Y+
Sbjct: 206 VDPNNPNGPKMPFRQYH 222
>pdb|1VNF| Chloroperoxidase From The Fungus Curvularia Inaequalis: Mutant
R360a
Length = 609
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 511 IDPNDPNGPGLPYRHYY 527
+DPN+PNGP +P+R Y+
Sbjct: 206 VDPNNPNGPKMPFRQYH 222
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 524 RHYYTDQSSQYPQNLNTPNPLYRNMPQNSHAIGNIIGGFMQANYNILSNVIV-GAGT 579
R Y D S P NL P+ + P NSH I ++ F +A +V+V G+GT
Sbjct: 152 RQYGRDYRSVMPTNLYGPHDNFH--PSNSHVIPALLRRFHEATAQSAPDVVVWGSGT 206
>pdb|1LPP| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
Hexadecanesulfonate
pdb|1LPN| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
Dodecanesulfonate
pdb|1LPM| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
(1r)-Menthyl Hexyl Phosphonate
pdb|1LPO| Lipase (E.C.3.1.1.3) (Triacylglycerol Lipase) Complexed With
Hexadecanesulfonate
pdb|1LPS| Lipase (E.C.3.1.1.3) Complexed With (1s)-Menthyl Hexyl Phosphonate
Length = 549
Score = 30.0 bits (66), Expect = 1.2
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 6/136 (4%)
Query: 414 ISTSANVYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVT 473
I T Y G + + +D NA P + D TLARR FL + K +
Sbjct: 389 IDTLMTAYPGDITQGSPFDTGILNALTPQFKRISAVLGDLGFTLARRYFLNHYTGGTKYS 448
Query: 474 HPISEDYGNVFEYGMIYQNLSVFSGLDKGKNGYYKNN-----IDPNDPNGPGLPYRHYYT 528
+S+ + G + N VF G NN DPN GL +
Sbjct: 449 F-LSKQLSGLPVLGTFHSNDIVFQDYLLGSGSLIYNNAFIAFATDLDPNTAGLLVKWPEY 507
Query: 529 DQSSQYPQNLNTPNPL 544
SSQ NL N L
Sbjct: 508 TSSSQSGNNLMMINAL 523
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 524 RHYYTDQSSQYPQNLNTPNPLYRNMPQNSHAIGNIIGGFMQANYNILSNVIV-GAGT 579
R Y D S P NL P+ + P NSH I ++ F +A +V+V G+GT
Sbjct: 152 RQYGRDYRSVMPTNLYGPHDNFH--PSNSHVIPALLRRFHEATAQSAPDVVVWGSGT 206
>pdb|1CRL| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TRH| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
Length = 534
Score = 30.0 bits (66), Expect = 1.2
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 6/136 (4%)
Query: 414 ISTSANVYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSGVNFKVT 473
I T Y G + + +D NA P + D TLARR FL + K +
Sbjct: 374 IDTLMTAYPGDITQGSPFDTGILNALTPQFKRISAVLGDLGFTLARRYFLNHYTGGTKYS 433
Query: 474 HPISEDYGNVFEYGMIYQNLSVFSGLDKGKNGYYKNN-----IDPNDPNGPGLPYRHYYT 528
+S+ + G + N VF G NN DPN GL +
Sbjct: 434 F-LSKQLSGLPVLGTFHSNDIVFQDYLLGSGSLIYNNAFIAFATDLDPNTAGLLVKWPEY 492
Query: 529 DQSSQYPQNLNTPNPL 544
SSQ NL N L
Sbjct: 493 TSSSQSGNNLMMINAL 508
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 524 RHYYTDQSSQYPQNLNTPNPLYRNMPQNSHAIGNIIGGFMQANYNILSNVIV-GAGT 579
R Y D S P NL P+ + P NSH I ++ F +A +V+V G+GT
Sbjct: 152 RQYGRDYRSVMPTNLYGPHDNFH--PSNSHVIPALLRRFHEATAQSAPDVVVWGSGT 206
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
Length = 439
Score = 28.5 bits (62), Expect = 3.4
Identities = 24/115 (20%), Positives = 41/115 (34%), Gaps = 2/115 (1%)
Query: 309 KHEGGPNFNQPRVESTAFLGVRGGNYNPVVNPFAYNSNEPANPDYIPEVKE-WCNNPDNI 367
+H G P F+ P AF + G+ N V A + W + N+
Sbjct: 245 RHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 303
Query: 368 SQCTQGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYH 422
+ + A RP I G P I W+G+ + + + +S++ H
Sbjct: 304 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH 358
>pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|B Chain B, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|F Chain F, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|D Chain D, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|G Chain G, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|H Chain H, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|C Chain C, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli
Length = 244
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 225 MSVGTPSEVNSVLAKINGYINETDSISVSYNLTRDN 260
++V P+ + SVL KI E D + + +TRDN
Sbjct: 58 LNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDN 93
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 28.1 bits (61), Expect = 4.4
Identities = 24/115 (20%), Positives = 40/115 (33%), Gaps = 2/115 (1%)
Query: 309 KHEGGPNFNQPRVESTAFLGVRGGNYNPVVNPFAYNSNEPANPDYIPEVKE-WCNNPDNI 367
+H G P F+ P AF + G+ N V A + W + N+
Sbjct: 217 RHNGAPAFS-PDGSKLAFALSKTGSLNLYVXDLASGQIRQVTDGRSNNTEPTWFPDSQNL 275
Query: 368 SQCTQGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYH 422
+ + A RP I G P I W+G+ + + +S++ H
Sbjct: 276 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFXVXVSSNGGQQH 330
>pdb|1HQZ|1 Chain 1, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|2 Chain 2, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|4 Chain 4, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|6 Chain 6, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|9 Chain 9, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|5 Chain 5, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|3 Chain 3, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|7 Chain 7, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|8 Chain 8, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
Length = 141
Score = 28.1 bits (61), Expect = 4.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 791 QYGLIKIHKPGYGVHN-VFINWTPPSKKWQ-----GLRISAVFNNILNKQYVDQTS 840
QYGL ++ PG V + I W P S + +AV NN+ +V T+
Sbjct: 65 QYGLARVSPPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTA 120
>pdb|1CGX| Cyclomaltodextrin Glucanotransferase (Cgtase) (E.C.2.4.1.19)
Mutant With Tyr 195 Replaced By Leu (Y195l)
Length = 686
Score = 28.1 bits (61), Expect = 4.4
Identities = 42/172 (24%), Positives = 57/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN +D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLLDLADLN 201
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 27.7 bits (60), Expect = 5.8
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 115 DPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDA 149
+P +K EVI A AS PGA AGK+ FT +A
Sbjct: 381 NPAALKAGEVIGSALPAS--PGAAAGKVYFTADEA 413
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 27.7 bits (60), Expect = 5.8
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 115 DPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDA 149
+P +K EVI A AS PGA AGK+ FT +A
Sbjct: 381 NPAALKAGEVIGSALPAS--PGAAAGKVYFTADEA 413
>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
Length = 571
Score = 27.7 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 183 GKNWDILAYYNHQNIFYYRDGNNA 206
G NW AY N+FYY GN A
Sbjct: 234 GTNWGWYAYDPKLNLFYYGSGNPA 257
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 27.7 bits (60), Expect = 5.8
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 115 DPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDA 149
+P +K EVI A AS PGA AGK+ FT +A
Sbjct: 382 NPAALKAGEVIGSALPAS--PGAAAGKVYFTADEA 414
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 27.7 bits (60), Expect = 5.8
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 115 DPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDA 149
+P +K EVI A AS PGA AGK+ FT +A
Sbjct: 381 NPAALKAGEVIGSALPAS--PGAAAGKVYFTADEA 413
>pdb|1CYG| Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 27.7 bits (60), Expect = 5.8
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G + W S + + +N S SA+ YHG +
Sbjct: 52 QGIINKINDGYLTDMGV--TAIW-----ISQPVENVFSVMNDASGSAS-YHGYWAR---- 99
Query: 432 DMTPPNAQNPSANDWT--LGNADAEGTLARRIFLINSGVNFKVTHPISEDYGNVFEYGMI 489
D PN + +D+ + A A+G F N T P SE + E G +
Sbjct: 100 DFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNH------TSPASETNPSYMENGRL 153
Query: 490 YQNLSVFSGLDKGKNGYYKNN 510
Y N ++ G N Y+ +N
Sbjct: 154 YDNGTLLGGYTNDANMYFHHN 174
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 27.7 bits (60), Expect = 5.8
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 115 DPNMIKEVEVIKGAANASAGPGAVAGKLSFTTIDA 149
+P +K EVI A AS PGA AGK+ FT +A
Sbjct: 381 NPAALKAGEVIGSALPAS--PGAAAGKVYFTADEA 413
>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
Length = 573
Score = 27.7 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 183 GKNWDILAYYNHQNIFYYRDGNNA 206
G NW AY N+FYY GN A
Sbjct: 236 GTNWGWYAYDPKLNLFYYGSGNPA 259
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 27.3 bits (59), Expect = 7.5
Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 35/166 (21%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSGLDKGKNGYYKNNIDPNDPNGPGLPYRHYY 527
+ E G +Y N ++ G + +N+ + Y++ Y
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNLGTDFSTTENGIYKNLY 195
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 27.3 bits (59), Expect = 7.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 411 LNAISTSANVYH-GLVPKNPDYDMTPPNAQNPSANDWTLGNAD 452
LN + +A +Y GL P P+YDMT NA + W D
Sbjct: 440 LNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKED 482
>pdb|1CGV| Cyclomaltodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Mutant With Tyr 195 Replaced By Phe (Y195f)
pdb|2DIJ| Complex Of A Y195f Mutant Cgtase From B. Circulans Strain 251
Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 27.3 bits (59), Expect = 7.5
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLFDLADLN 201
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin
Length = 611
Score = 27.3 bits (59), Expect = 7.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 411 LNAISTSANVYH-GLVPKNPDYDMTPPNAQNPSANDWTLGNAD 452
LN + +A +Y GL P P+YDMT NA + W D
Sbjct: 440 LNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKED 482
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 26.9 bits (58), Expect = 9.8
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLN 201
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 26.9 bits (58), Expect = 9.8
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLN 201
>pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)
Length = 684
Score = 26.9 bits (58), Expect = 9.8
Identities = 24/105 (22%), Positives = 40/105 (37%), Gaps = 12/105 (11%)
Query: 408 YGQLNAISTSANVYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSG 467
+ +N + YHG + D+ T P + + A A+G I
Sbjct: 84 FATINYSGVTNTAYHGYWAR--DFKKTNPYFGTMADFQNLITTAHAKG--------IKIV 133
Query: 468 VNFKVTH--PISEDYGNVFEYGMIYQNLSVFSGLDKGKNGYYKNN 510
++F H P E + E G +Y N ++ G NGY+ +N
Sbjct: 134 IDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHN 178
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 26.9 bits (58), Expect = 9.8
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLN 201
>pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1CXF| Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM Bacillus
Circulans Strain 251 With Maltotetraose At 120 K And Ph
9.1 Obtained After Soaking The Crystal With
Alpha-Cyclodextrin
Length = 686
Score = 26.9 bits (58), Expect = 9.8
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLN 201
>pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 376
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 12/33 (36%)
Query: 331 GGNYNPVVNPFAYNSNEPANPDYIPEVKEWCNN 363
GG YNPV+N Y+ +V EW NN
Sbjct: 132 GGAYNPVLN------------GYLDQVAEWANN 152
>pdb|6CGT| Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.9 bits (58), Expect = 9.8
Identities = 24/105 (22%), Positives = 40/105 (37%), Gaps = 12/105 (11%)
Query: 408 YGQLNAISTSANVYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSG 467
+ +N + YHG + D+ T P + + A A+G I
Sbjct: 84 FATINYSGVTNTAYHGYWAR--DFKKTNPYFGTMADFQNLITTAHAKG--------IKIV 133
Query: 468 VNFKVTH--PISEDYGNVFEYGMIYQNLSVFSGLDKGKNGYYKNN 510
++F H P E + E G +Y N ++ G NGY+ +N
Sbjct: 134 IDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHN 178
>pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|1CGU| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) Mutant With Asp
229 Replaced By Ala (D229a)
pdb|7CGT| Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.9 bits (58), Expect = 9.8
Identities = 24/105 (22%), Positives = 40/105 (37%), Gaps = 12/105 (11%)
Query: 408 YGQLNAISTSANVYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSG 467
+ +N + YHG + D+ T P + + A A+G I
Sbjct: 84 FATINYSGVTNTAYHGYWAR--DFKKTNPYFGTMADFQNLITTAHAKG--------IKIV 133
Query: 468 VNFKVTH--PISEDYGNVFEYGMIYQNLSVFSGLDKGKNGYYKNN 510
++F H P E + E G +Y N ++ G NGY+ +N
Sbjct: 134 IDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHN 178
>pdb|1CDG| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) (Cgtase)
pdb|1CXE| Complex Of Cgtase With Maltotetraose At Room Temperature And Ph
9.1 Based On Diffraction Data Of A Crystal Soaked With
Alpha-Cyclodextrin
pdb|1CXI| Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120 K And
Ph 7.55
pdb|1CXH| Complex Of Cgtase With Maltotetraose At Room Temperature And Ph
9.6 Based On Diffraction Data Of A Crystal Soaked With
Maltoheptaose
pdb|2CXG| Cyclodextrin Glycosyltransferase Complexed To The Inhibitor
Acarbose
Length = 686
Score = 26.9 bits (58), Expect = 9.8
Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 51/172 (29%)
Query: 372 QGAIRPSNGGYQIGYGTPNSINWQGTSDSSGGAQAGYGQLNAISTSANVYHGLVPKNPDY 431
QG I N GY G G + W S + Y +N + YHG + D+
Sbjct: 55 QGIINKINDGYLTGMGV--TAIW-----ISQPVENIYSIINYSGVNNTAYHGYWAR--DF 105
Query: 432 DMTPPNAQNPSANDWTLGNADAEGTLA--RRIFLINSGVNFKV--------THPISEDYG 481
T P A GT+A + + N KV T P S D
Sbjct: 106 KKTNP----------------AYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
Query: 482 NVFEYGMIYQNLSVFSG----------------LDKGKNGYYKNNIDPNDPN 517
+ E G +Y N ++ G +NG YKN D D N
Sbjct: 150 SFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLN 201
>pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 383
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 12/33 (36%)
Query: 331 GGNYNPVVNPFAYNSNEPANPDYIPEVKEWCNN 363
GG YNPV+N Y+ +V EW NN
Sbjct: 136 GGAYNPVLN------------GYLDQVAEWANN 156
>pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From Pseudomonas
Cellulosa
Length = 385
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 12/33 (36%)
Query: 331 GGNYNPVVNPFAYNSNEPANPDYIPEVKEWCNN 363
GG YNPV+N Y+ +V EW NN
Sbjct: 136 GGAYNPVLN------------GYLDQVAEWANN 156
>pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase Complexed With Its
Main Product Beta-Cyclodextrin
pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
Length = 684
Score = 26.9 bits (58), Expect = 9.8
Identities = 24/105 (22%), Positives = 40/105 (37%), Gaps = 12/105 (11%)
Query: 408 YGQLNAISTSANVYHGLVPKNPDYDMTPPNAQNPSANDWTLGNADAEGTLARRIFLINSG 467
+ +N + YHG + D+ T P + + A A+G I
Sbjct: 84 FATINYSGVTNTAYHGYWAR--DFKKTNPYFGTMADFQNLITTAHAKG--------IKIV 133
Query: 468 VNFKVTH--PISEDYGNVFEYGMIYQNLSVFSGLDKGKNGYYKNN 510
++F H P E + E G +Y N ++ G NGY+ +N
Sbjct: 134 IDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHN 178
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,823,696
Number of Sequences: 13198
Number of extensions: 280357
Number of successful extensions: 658
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 54
length of query: 877
length of database: 2,899,336
effective HSP length: 96
effective length of query: 781
effective length of database: 1,632,328
effective search space: 1274848168
effective search space used: 1274848168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)