BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644648|ref|NP_206817.1| hypothetical protein
[Helicobacter pylori 26695]
(93 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 26 0.63
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 26 0.63
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 26 0.63
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 26 0.63
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 26 0.82
pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride C... 26 0.82
pdb|1KB9|H Chain H, Yeast Cytochrome Bc1 Complex >gi|142777... 25 1.8
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Fo... 22 9.1
pdb|1B6Z|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase >g... 22 9.1
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 26.2 bits (56), Expect = 0.63
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 7 KIVFLVGMCVSSLFAEGLEGFFNALEAQ 34
+IV ++G V F EGL NALE Q
Sbjct: 16 RIVAVIGAVVDVQFDEGLPPILNALEVQ 43
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.2 bits (56), Expect = 0.63
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 7 KIVFLVGMCVSSLFAEGLEGFFNALEAQ 34
+IV ++G V F EGL NALE Q
Sbjct: 16 RIVAVIGAVVDVQFDEGLPPILNALEVQ 43
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.2 bits (56), Expect = 0.63
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 7 KIVFLVGMCVSSLFAEGLEGFFNALEAQ 34
+IV ++G V F EGL NALE Q
Sbjct: 16 RIVAVIGAVVDVQFDEGLPPILNALEVQ 43
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three
Catalytic Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Peptide Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin
B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three
Catalytic Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Peptide Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Peptide Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin
B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin
B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three
Catalytic Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
Length = 482
Score = 26.2 bits (56), Expect = 0.63
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 7 KIVFLVGMCVSSLFAEGLEGFFNALEAQ 34
+IV ++G V F EGL NALE Q
Sbjct: 16 RIVAVIGAVVDVQFDEGLPPILNALEVQ 43
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 25.8 bits (55), Expect = 0.82
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 7 KIVFLVGMCVSSLFAEGLEGFFNALEAQ 34
+IV ++G V F EGL NALE Q
Sbjct: 12 QIVAVIGAVVDVQFDEGLPPILNALEVQ 39
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
Length = 473
Score = 25.8 bits (55), Expect = 0.82
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 4/27 (14%)
Query: 66 LFTILGVVFGIFLFFKAPSLANWFMGI 92
L+ ILG++FGIF P W +G+
Sbjct: 254 LYLILGIIFGIF----GPIFNKWVLGM 276
>pdb|1KB9|H Chain H, Yeast Cytochrome Bc1 Complex
pdb|1EZV|G Chain G, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|H Chain H, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|S Chain S, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 93
Score = 24.6 bits (52), Expect = 1.8
Identities = 16/62 (25%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 11 LVGMCVSSLFAEGLEGFF-NALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTI 69
+ VS + L+G F NA+ + ++ + ++I GI Y W+N + + E L++
Sbjct: 23 ITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSK 82
Query: 70 LG 71
G
Sbjct: 83 AG 84
>pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
Length = 184
Score = 22.3 bits (46), Expect = 9.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 54 YVWRNLDRWKEI 65
Y+W N+ RW+ I
Sbjct: 82 YLWNNIKRWQAI 93
>pdb|1B6Z|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B6Z|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1GTQ|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1GTQ|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B66|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B66|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
Length = 140
Score = 22.3 bits (46), Expect = 9.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 51 IAIYVWRNLDR 61
+A+Y+W NL R
Sbjct: 105 VAVYIWENLQR 115
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.337 0.150 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,194
Number of Sequences: 13198
Number of extensions: 15709
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 9
length of query: 93
length of database: 2,899,336
effective HSP length: 69
effective length of query: 24
effective length of database: 1,988,674
effective search space: 47728176
effective search space used: 47728176
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 46 (22.3 bits)