BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644782|ref|NP_206952.1| recombinase (recA)
[Helicobacter pylori 26695]
(347 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G19|A Chain A, Structure Of Reca Protein >gi|12084113|... 426 e-120
pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy... 425 e-120
pdb|2REB| The Structure Of The E. Coli Reca Protein Monom... 423 e-119
pdb|1AA3| C-Terminal Domain Of The E. Coli Reca, Nmr, Min... 63 4e-11
pdb|1CK1|A Chain A, Structure Of Staphylococcal Enterotoxin... 30 0.41
pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, ... 29 0.69
pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome... 29 0.69
pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome... 29 0.69
pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Cor... 29 0.69
pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE... 28 1.5
pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INT... 28 1.5
pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclin... 28 1.5
pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Hollida... 28 1.5
pdb|4CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp ... 28 1.5
pdb|2CRX|B Chain B, Structure Of The Holliday Junction Inte... 28 1.5
pdb|5CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp ... 28 1.5
pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INT... 28 1.5
pdb|1F44|A Chain A, Crystal Structure Of Trimeric Cre Recom... 28 1.5
pdb|1DRG|A Chain A, Crystal Structure Of Trimeric Cre Recom... 28 1.5
pdb|1DAT| Cubic Crystal Structure Recombinant Horse L Apo... 28 2.0
pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) Fr... 27 2.6
pdb|1DHR| Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.1... 27 2.6
pdb|1RLA|A Chain A, Three-Dimensional Structure Of Rat Live... 27 3.4
pdb|1HQX|A Chain A, R308k Arginase Variant >gi|14488501|pdb... 27 3.4
pdb|2RLA|A Chain A, Altering The Binuclear Manganese Cluste... 27 3.4
pdb|1HQG|A Chain A, Crystal Structure Of The H141c Arginase... 27 3.4
pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1... 27 4.5
pdb|1DER|A Chain A, The 2.4 Angstrom Crystal Structure Of T... 27 4.5
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-... 27 4.5
pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tube... 27 4.5
pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo... 27 4.5
pdb|1GRL| Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain... 27 4.5
pdb|1OEL|A Chain A, Mol_id: 1; Molecule: Groel (Hsp60 Class... 27 4.5
pdb|1HDR| Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.7... 26 5.9
pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome... 26 5.9
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 26 7.6
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 26 7.6
pdb|1H15|B Chain B, X-Ray Crystal Structure Of Hla-Dra10101... 26 7.6
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 26 7.6
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Comp... 26 7.6
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 26 7.6
>pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
Length = 350
Score = 426 bits (1094), Expect = e-120
Identities = 209/343 (60%), Positives = 272/343 (78%), Gaps = 10/343 (2%)
Query: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEI 65
D++KA+ LA+ QI+K +GKG+++RLGD+ + I I TGS+ LD+ALGIGG+P+GR+IEI
Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 66 YGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQ 125
YGPESSGKTT++LH +A Q GGV AFIDAEHALD YAK+LGVDT++LLVSQPDTGEQ
Sbjct: 66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 126 ALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHK 185
ALEI + + RSG +D+VV+DSVAAL P+AE++G+MGD HVGLQARLMS ALRK+TG L+
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 186 MNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAK 245
TT IFINQ+R KIG+M +GSPETTTGG ALKFYASVR+D+RR+ +LK +GNR +
Sbjct: 186 SGTTAIFINQLRDKIGVM-FGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTR 244
Query: 246 AKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRE 305
KVVKNK PF++AEFDI++G+GIS+EG +ID GV ++ KSGAW +Y+ ++LGQG+E
Sbjct: 245 VKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKE 304
Query: 306 NAKALLKEDKALADEITLKIKESIG---------SNEEIMPLP 339
NA+ L E+ +ADEI KIKE +G SN+ ++P P
Sbjct: 305 NARNFLVENADVADEIEKKIKEKLGIGAVVTDDPSNDGVLPAP 347
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 425 bits (1092), Expect = e-120
Identities = 207/337 (61%), Positives = 273/337 (80%), Gaps = 1/337 (0%)
Query: 1 MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKG 60
MAIDE+KQKA++ A+ QI+K FGKG+++RLG+ + +++ISTGSL LD+ALG GG+P G
Sbjct: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60
Query: 61 RIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQP 120
RI+EIYGPESSGKTTL+L +IA Q+ G CAFIDAEHALD YA++LGVD +NLL SQP
Sbjct: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120
Query: 121 DTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKIT 180
DTGEQALEI + + RSG +D++VVDSVAALTPKAEI+G++GD H+GL AR+MS A+RK+
Sbjct: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180
Query: 181 GVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHI 240
G L + NT LIFINQIRMKIG+M +G+PETTTGGNALKFYASVR+DIRRI ++K+ E +
Sbjct: 181 GNLKQSNTLLIFINQIRMKIGVM-FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239
Query: 241 GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKL 300
G+ + KVVKNK+A PF++AEF I++GEGI+ GE++D GVK +++K+GAW SY+ +K+
Sbjct: 240 GSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKI 299
Query: 301 GQGRENAKALLKEDKALADEITLKIKESIGSNEEIMP 337
GQG+ NA A LK++ A EI K++E + SN P
Sbjct: 300 GQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336
>pdb|2REB| The Structure Of The E. Coli Reca Protein Monomer And Polymer
pdb|1REA| Structure Of The Reca Protein-Adp Complex
Length = 352
Score = 423 bits (1087), Expect = e-119
Identities = 206/336 (61%), Positives = 272/336 (80%), Gaps = 1/336 (0%)
Query: 2 AIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGR 61
AIDE+KQKA++ A+ QI+K FGKG+++RLG+ + +++ISTGSL LD+ALG GG+P GR
Sbjct: 1 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 60
Query: 62 IIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPD 121
I+EIYGPESSGKTTL+L +IA Q+ G CAFIDAEHALD YA++LGVD +NLL SQPD
Sbjct: 61 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 120
Query: 122 TGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITG 181
TGEQALEI + + RSG +D++VVDSVAALTPKAEI+G++GD H+GL AR+MS A+RK+ G
Sbjct: 121 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 180
Query: 182 VLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIG 241
L + NT LIFINQIRMKIG+M +G+PETTTGGNALKFYASVR+DIRRI ++K+ E +G
Sbjct: 181 NLKQSNTLLIFINQIRMKIGVM-FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 239
Query: 242 NRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLG 301
+ + KVVKNK+A PF++AEF I++GEGI+ GE++D GVK +++K+GAW SY+ +K+G
Sbjct: 240 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 299
Query: 302 QGRENAKALLKEDKALADEITLKIKESIGSNEEIMP 337
QG+ NA A LK++ A EI K++E + SN P
Sbjct: 300 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 335
>pdb|1AA3| C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized Average
Structure
Length = 63
Score = 63.2 bits (152), Expect = 4e-11
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 274 GEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADEITLKIKESIGSN 332
GE++D GVK +++K+GAW SY+ +K+GQG+ NA A LK++ A EI K++E + SN
Sbjct: 5 GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSN 63
>pdb|1CK1|A Chain A, Structure Of Staphylococcal Enterotoxin C3
pdb|1JCK|B Chain B, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|D Chain D, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
Length = 239
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/53 (26%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 15 IKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYG 67
+K +DK + + DK++ D + T L DLA K ++++YG
Sbjct: 38 VKSVDKFLAHDLIYNINDKKLNNYDKVKTELLNEDLA----NKYKDEVVDVYG 86
>pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile
Mutant) Complexed With Staphylococcal Enterotoxin C3
Variant 3b2 (Sec3-3b2)
pdb|1KLU|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
Length = 239
Score = 29.3 bits (64), Expect = 0.69
Identities = 14/53 (26%), Positives = 26/53 (48%), Gaps = 4/53 (7%)
Query: 15 IKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYG 67
+K +D F + + DK+++ D + T L DLA K ++++YG
Sbjct: 38 VKSVDSFFKWDLIYNISDKKLKNYDKVKTELLNEDLAKKY----KDEVVDVYG 86
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 287
Score = 29.3 bits (64), Expect = 0.69
Identities = 29/110 (26%), Positives = 52/110 (46%), Gaps = 16/110 (14%)
Query: 240 IGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKK 299
+G +A + N V P +FG G+ K G L +++ SG++ Y+
Sbjct: 115 LGQYVQAHTLYNSVRP----FGVSTIFG-GVDKNG------AHLYMLEPSGSYWGYKGAA 163
Query: 300 LGQGRENAKALLKEDKALADEIT--LKIKESIGSNEEIMPLPDEPLEEME 347
G+GR++AKA L++ L D L +E++ +I+ L E +E +
Sbjct: 164 TGKGRQSAKAELEK---LVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKD 210
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
Length = 244
Score = 29.3 bits (64), Expect = 0.69
Identities = 29/110 (26%), Positives = 52/110 (46%), Gaps = 16/110 (14%)
Query: 240 IGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKK 299
+G +A + N V P +FG G+ K G L +++ SG++ Y+
Sbjct: 112 LGQYVQAHTLYNSVRP----FGVSTIFG-GVDKNG------AHLYMLEPSGSYWGYKGAA 160
Query: 300 LGQGRENAKALLKEDKALADEIT--LKIKESIGSNEEIMPLPDEPLEEME 347
G+GR++AKA L++ L D L +E++ +I+ L E +E +
Sbjct: 161 TGKGRQSAKAELEK---LVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKD 207
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
Length = 248
Score = 29.3 bits (64), Expect = 0.69
Identities = 29/110 (26%), Positives = 52/110 (46%), Gaps = 16/110 (14%)
Query: 240 IGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKK 299
+G +A + N V P +FG G+ K G L +++ SG++ Y+
Sbjct: 116 LGQYVQAHTLYNSVRP----FGVSTIFG-GVDKNG------AHLYMLEPSGSYWGYKGAA 164
Query: 300 LGQGRENAKALLKEDKALADEIT--LKIKESIGSNEEIMPLPDEPLEEME 347
G+GR++AKA L++ L D L +E++ +I+ L E +E +
Sbjct: 165 TGKGRQSAKAELEK---LVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKD 211
>pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
pdb|3CRX|B Chain B, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
Length = 343
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 299
Query: 307 AKA 309
A+A
Sbjct: 300 ARA 302
>pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
Length = 322
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 280
Query: 307 AKA 309
A+A
Sbjct: 281 ARA 283
>pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclinic Form
Crystallized At Ph 8.0
pdb|1SE2| Staphylococcal Enterotoxin C2, Monoclinic Form
pdb|1I4P|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At
100k Crystallized At Ph 5.5
pdb|1I4R|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At
100k Crystallized At Ph 6.5
pdb|1I4Q|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At
100k Crystallized At Ph 6.0
pdb|1STE| Staphylococcal Enterotoxin C2 From Staphylococcus Aureus
pdb|1CQV|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At
100k Crystallized At Ph 5.0
Length = 239
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/53 (24%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 15 IKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYG 67
+ +DK + + DK+++ D + T L DLA K ++++YG
Sbjct: 38 VMSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKY----KDEVVDVYG 86
>pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1KBU|B Chain B, Cre Recombinase Bound To A Loxp Holliday Junction
Length = 349
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 247 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 305
Query: 307 AKA 309
A+A
Sbjct: 306 ARA 308
>pdb|4CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|4CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 322
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 280
Query: 307 AKA 309
A+A
Sbjct: 281 ARA 283
>pdb|2CRX|B Chain B, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|2CRX|A Chain A, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
Length = 343
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 299
Query: 307 AKA 309
A+A
Sbjct: 300 ARA 302
>pdb|5CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|5CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 345
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 299
Query: 307 AKA 309
A+A
Sbjct: 300 ARA 302
>pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
Length = 322
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 280
Query: 307 AKA 309
A+A
Sbjct: 281 ARA 283
>pdb|1F44|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 324
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 280
Query: 307 AKA 309
A+A
Sbjct: 281 ARA 283
>pdb|1DRG|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 323
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 247 KVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGREN 306
+V KN VA P ++ EGI + + YG K D + AW S ++G R+
Sbjct: 221 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW-SGHSARVGAARDM 279
Query: 307 AKA 309
A+A
Sbjct: 280 ARA 282
>pdb|1DAT| Cubic Crystal Structure Recombinant Horse L Apoferritin
pdb|1AEW| L-Chain Horse Apoferritin
Length = 174
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 55 GGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALD--VHYAKRLG--- 109
G P I +S + L LH + Q + +C F+++ H LD V K++G
Sbjct: 90 GTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLES-HFLDEEVKLIKKMGDHL 148
Query: 110 VDTENLLVSQPDTGEQALEIL 130
+ + L+ SQ GE E L
Sbjct: 149 TNIQRLVGSQAGLGEYLFERL 169
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 27.3 bits (59), Expect = 2.6
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 69 ESSGKTTLSLHI-------IAECQKNGGVCAFIDA---EHALDVHYAKRLGVDTENLLVS 118
E++G T +H+ A K GV +I++ LD YA+R GV+ ++S
Sbjct: 228 ETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMS 287
Query: 119 QPDTGEQALEILETITRSGGIDLVVVD 145
P ++ ++L G ID V D
Sbjct: 288 PPLRDKRNQKVLWDALAQGFIDTVGTD 314
>pdb|1DHR| Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.10) Complex With
Nadh
pdb|1DIR|A Chain A, Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.7)
pdb|1DIR|B Chain B, Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.7)
pdb|1DIR|C Chain C, Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.7)
pdb|1DIR|D Chain D, Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.7)
Length = 241
Score = 27.3 bits (59), Expect = 2.6
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 5 EDKQKAISLAIKQIDKVFGKGALVR------LGDKQVEKIDSISTGSLGLDLALGIGGVP 58
E+++ + S+ +K D + V LGD++V+ I ++ G GG
Sbjct: 41 ENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGG--------WAGGNA 92
Query: 59 KGRII----EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALD 101
K + + ++ +S +T+S H+ + K GG+ A+ ALD
Sbjct: 93 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD 139
>pdb|1RLA|A Chain A, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|B Chain B, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|C Chain C, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1HQH|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQF|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1D3V|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1D3V|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1HQ5|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L- Arginine Analogue
pdb|1HQ5|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L- Arginine Analogue
Length = 323
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 65 IYGPESSGKTTLSLH-IIAECQKNGGVCAFIDAEHALDV 102
+ P S GK L ++AE QKNG + + +H++ +
Sbjct: 67 VKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAI 105
>pdb|1HQX|A Chain A, R308k Arginase Variant
pdb|1HQX|B Chain B, R308k Arginase Variant
pdb|1HQX|C Chain C, R308k Arginase Variant
Length = 323
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 65 IYGPESSGKTTLSLH-IIAECQKNGGVCAFIDAEHALDV 102
+ P S GK L ++AE QKNG + + +H++ +
Sbjct: 67 VKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAI 105
>pdb|2RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|2RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|2RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
Length = 323
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 65 IYGPESSGKTTLSLH-IIAECQKNGGVCAFIDAEHALDV 102
+ P S GK L ++AE QKNG + + +H++ +
Sbjct: 67 VKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAI 105
>pdb|1HQG|A Chain A, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
pdb|1HQG|B Chain B, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
pdb|1HQG|C Chain C, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
Length = 323
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 65 IYGPESSGKTTLSLH-IIAECQKNGGVCAFIDAEHALDV 102
+ P S GK L ++AE QKNG + + +H++ +
Sbjct: 67 VKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAI 105
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 507
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 39 DSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 94
+ + TG + +D + +G +G+ I G +GKT ++ I Q +C ++
Sbjct: 145 EPLQTGLIAIDAMIPVG---RGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYV 197
>pdb|1DER|A Chain A, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|B Chain B, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|C Chain C, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|D Chain D, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|E Chain E, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|F Chain F, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|G Chain G, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|H Chain H, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|I Chain I, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|J Chain J, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|K Chain K, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|L Chain L, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|M Chain M, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|N Chain N, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
Length = 547
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/108 (26%), Positives = 48/108 (43%), Gaps = 14/108 (12%)
Query: 107 RLGVDTENLLVSQPDTGEQALE-----ILETITRSGGIDLVVVDSVAALTPKAEIDGDMG 161
++G TE + + E AL + E + GG+ L+ V S A ++ G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLA-----DLRGQNE 433
Query: 162 DQHVGLQA--RLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGS 207
DQ+VG++ R M LR+I VL+ + N ++ G GY +
Sbjct: 434 DQNVGIKVALRAMEAPLRQI--VLNCGEEPSVVANTVKGGDGNYGYNA 479
>pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
Length = 547
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/108 (26%), Positives = 48/108 (43%), Gaps = 14/108 (12%)
Query: 107 RLGVDTENLLVSQPDTGEQALE-----ILETITRSGGIDLVVVDSVAALTPKAEIDGDMG 161
++G TE + + E AL + E + GG+ L+ V S A ++ G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLA-----DLRGQNE 433
Query: 162 DQHVGLQA--RLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGS 207
DQ+VG++ R M LR+I VL+ + N ++ G GY +
Sbjct: 434 DQNVGIKVALRAMEAPLRQI--VLNCGEEPSVVANTVKGGDGNYGYNA 479
>pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa
pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa
Length = 366
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 14/83 (16%)
Query: 195 QIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKNKVA 254
+I K G++ + ET GN + + RIA A + +
Sbjct: 66 EIDRKTGVVRVIARETDEAGNLISEWDDTPEGFGRIA--------------ATTARQVML 111
Query: 255 PPFREAEFDIMFGEGISKEGEII 277
FR+AE + +GE ++EGEI+
Sbjct: 112 QRFRDAENERTYGEFSTREGEIV 134
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR6|A Chain A, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|B Chain B, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|C Chain C, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|D Chain D, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|E Chain E, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|F Chain F, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|G Chain G, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|H Chain H, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|I Chain I, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|J Chain J, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|K Chain K, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|L Chain L, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|M Chain M, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|N Chain N, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
Length = 547
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/108 (26%), Positives = 48/108 (43%), Gaps = 14/108 (12%)
Query: 107 RLGVDTENLLVSQPDTGEQALE-----ILETITRSGGIDLVVVDSVAALTPKAEIDGDMG 161
++G TE + + E AL + E + GG+ L+ V S A ++ G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLA-----DLRGQNE 433
Query: 162 DQHVGLQA--RLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGS 207
DQ+VG++ R M LR+I VL+ + N ++ G GY +
Sbjct: 434 DQNVGIKVALRAMEAPLRQI--VLNCGEEPSVVANTVKGGDGNYGYNA 479
>pdb|1GRL| Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: Null; Engineered:
Yes; Mutation: R13g, A126v
Length = 548
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/108 (26%), Positives = 48/108 (43%), Gaps = 14/108 (12%)
Query: 107 RLGVDTENLLVSQPDTGEQALE-----ILETITRSGGIDLVVVDSVAALTPKAEIDGDMG 161
++G TE + + E AL + E + GG+ L+ V S A ++ G
Sbjct: 380 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLA-----DLRGQNE 434
Query: 162 DQHVGLQA--RLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGS 207
DQ+VG++ R M LR+I VL+ + N ++ G GY +
Sbjct: 435 DQNVGIKVALRAMEAPLRQI--VLNCGEEPSVVANTVKGGDGNYGYNA 480
>pdb|1OEL|A Chain A, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|B Chain B, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|C Chain C, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|D Chain D, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|E Chain E, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|F Chain F, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|G Chain G, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
Length = 547
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/108 (26%), Positives = 48/108 (43%), Gaps = 14/108 (12%)
Query: 107 RLGVDTENLLVSQPDTGEQALE-----ILETITRSGGIDLVVVDSVAALTPKAEIDGDMG 161
++G TE + + E AL + E + GG+ L+ V S A ++ G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLA-----DLRGQNE 433
Query: 162 DQHVGLQA--RLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGS 207
DQ+VG++ R M LR+I VL+ + N ++ G GY +
Sbjct: 434 DQNVGIKVALRAMEAPLRQI--VLNCGEEPSVVANTVKGGDGNYGYNA 479
>pdb|1HDR| Dihydropteridine Reductase (Dhpr) (E.C.1.6.99.7) Complexed With
Nadh
Length = 244
Score = 26.2 bits (56), Expect = 5.9
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 5 EDKQKAISLAIKQIDKVFGKGALVR------LGDKQVEKIDSISTGSLGLDLALGIGGVP 58
E+++ + S+ +K D + V LG+++V+ I ++ G GG
Sbjct: 44 ENEEASASIIVKMTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGG--------WAGGNA 95
Query: 59 KGRII----EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALD 101
K + + ++ +S +T+S H+ + K GG+ A+ ALD
Sbjct: 96 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD 142
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 250
Score = 26.2 bits (56), Expect = 5.9
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 223 VRIDIRRIASLKQNEQHIGNRAKAKVVKNKVAPPFREAEFD---IMFGEGISKEGEIIDY 279
V +D R + ++ G K++ ++VA +EA FG + G
Sbjct: 84 VLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFN 143
Query: 280 GVKLDIVDKSGAWLSYQDKKLGQGRENAKALLK----EDKALADEI---TLKIKESI--- 329
G L VD SG++ ++ +G+G AK L+ ++ L D I L +KES+
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE 203
Query: 330 --GSNEEIMPLPDE 341
G E+ + DE
Sbjct: 204 FNGDTIELAIIGDE 217
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 25.8 bits (55), Expect = 7.6
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 57 VPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAF-----IDAEHALDVHYA------ 105
V KG + I GP SGK+TL I + + G F + E A HY
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 106 -----KRLGVDTENLLVSQPDTGEQALEIL 130
K + V ENLL+ + + GE L L
Sbjct: 90 TPQPLKEMTV-LENLLIGEINPGESPLNSL 118
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 25.8 bits (55), Expect = 7.6
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 207 SPETTTG---GNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVV-KNKVAPPFREAEF 262
SP+T G L ++ ++I+ + +KQ+E+ R AKVV K+K+ +EA+
Sbjct: 506 SPDTRAGYLENGKLILQRNIGLEIKDVQIIKQSEKEY-IRIDAKVVPKSKIDTKIQEAQL 564
Query: 263 DI 264
+I
Sbjct: 565 NI 566
>pdb|1H15|B Chain B, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1H15|E Chain E, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1FV1|E Chain E, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1FV1|B Chain B, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1HQR|B Chain B, Crystal Structure Of A Superantigen Bound To The High-
Affinity, Zinc-Dependent Site On Mhc Class Ii
Length = 190
Score = 25.8 bits (55), Expect = 7.6
Identities = 22/78 (28%), Positives = 32/78 (40%), Gaps = 2/78 (2%)
Query: 75 TLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETIT 134
TL H + C NG I+ + K V T L+ D Q L +LET+
Sbjct: 108 TLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTG--LIQNGDWTFQTLVMLETVP 165
Query: 135 RSGGIDLVVVDSVAALTP 152
RSG + V+ + +P
Sbjct: 166 RSGEVYTCQVEHPSVTSP 183
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 25.8 bits (55), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 5/29 (17%)
Query: 47 GLDLALGIGGVPKGRIIEIYGPESSGKTT 75
G+DL VP+G+I+ + G +GKTT
Sbjct: 24 GIDLK-----VPRGQIVTLIGANGAGKTT 47
>pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
Length = 367
Score = 25.8 bits (55), Expect = 7.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 52 LGIGGVPKGR-----------IIEIY------GPESSGKTTLSLHIIAECQKNGGVCAFI 94
+G+GGV G+ ++++Y GP GK L + + Q GGV I
Sbjct: 302 IGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAI 361
Query: 95 DAEH 98
A+H
Sbjct: 362 GADH 365
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 25.8 bits (55), Expect = 7.6
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 56 GVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENL 115
GV R I +YGP +GKT ++ A + G I+ + +K G NL
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIAR---AVANETGAFFFLINGPEIM----SKLAGESESNL 286
Query: 116 LVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHA 175
+ + + A I + +D + A+ PK E H ++ R++S
Sbjct: 287 RKAFEEAEKNAPAI------------IFIDELDAIAPKRE------KTHGEVERRIVSQL 328
Query: 176 LRKITGVLHKMNTTLI 191
L + G+ + + ++
Sbjct: 329 LTLMDGLKQRAHVIVM 344
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.136 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,986,572
Number of Sequences: 13198
Number of extensions: 83947
Number of successful extensions: 206
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 41
length of query: 347
length of database: 2,899,336
effective HSP length: 89
effective length of query: 258
effective length of database: 1,724,714
effective search space: 444976212
effective search space used: 444976212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)