BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646125|ref|NP_208307.1| hypothetical protein
[Helicobacter pylori 26695]
         (179 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2BDP|A  Chain A, Crystal Structure Of Bacillus Dna Polym...    24  8.8
pdb|1XWL|    Bacillus Stearothermophilus (Newly Identified S...    24  8.8

>pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
 pdb|3BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To Duplex Dna After The Incorporation Of +ttp
           By The Enzyme
 pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
          Length = 580

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 148 TKDDYIVKPDVLRAIKKYHKIAFKSVYWQQ 177
           TK  Y    DVL  +  YH+I    ++++Q
Sbjct: 254 TKTGYSTSADVLEKLAPYHEIVENILHYRQ 283



>pdb|1XWL|   Bacillus Stearothermophilus (Newly Identified Strain As Yet
           Unnamed) Dna Polymerase Fragment
          Length = 580

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 148 TKDDYIVKPDVLRAIKKYHKIAFKSVYWQQ 177
           TK  Y    DVL  +  YH+I    ++++Q
Sbjct: 254 TKTGYSTSADVLEKLAPYHEIVENILHYRQ 283



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.332    0.147    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 942,705
Number of Sequences: 13198
Number of extensions: 37885
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 2,899,336
effective HSP length: 82
effective length of query: 97
effective length of database: 1,817,100
effective search space: 176258700
effective search space used: 176258700
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)