BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646128|ref|NP_208310.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 0.59
pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed Wi... 28 1.0
pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell... 28 1.0
pdb|3SEB| Staphylococcal Enterotoxin B 28 1.0
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 28 1.3
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 28 1.3
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 27 1.7
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 27 1.7
pdb|1B48|A Chain A, Crystal Structure Of Mgsta4-4 In Comple... 27 1.7
pdb|1GUK|A Chain A, Crystal Structure Of Murine Alpha-Class... 27 1.7
pdb|4MDH|A Chain A, Cytoplasmic Malate Dehydrogenase (E.C.1... 27 2.2
pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of... 27 2.2
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 27 2.9
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 27 2.9
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 27 2.9
pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2... 26 3.8
pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 >gi|77... 26 5.0
pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotrop... 26 5.0
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus The... 25 6.5
pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Facto... 25 6.5
pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0 25 8.5
pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphospha... 25 8.5
pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragm... 25 8.5
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 25 8.5
pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydroge... 25 8.5
pdb|1B26|A Chain A, Glutamate Dehydrogenase >gi|6730076|pdb... 25 8.5
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 25 8.5
pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Dig... 25 8.5
pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 25 8.5
pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydroge... 25 8.5
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin >gi|49411... 25 8.5
pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 25 8.5
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 28.9 bits (63), Expect = 0.59
Identities = 17/74 (22%), Positives = 40/74 (53%), Gaps = 5/74 (6%)
Query: 124 ERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNK-L 182
+RK +++ E + Y E + + EK+ ND R++L + ++ ++L+ +E +L +
Sbjct: 510 QRKNEQMMEQKERSYQEHLKQLTEKMEND----RVQLLKEQERTLALKLQEQEQLLKEGF 565
Query: 183 NQEFESTNNQTREL 196
+E N+ ++L
Sbjct: 566 QKESRIMKNEIQDL 579
>pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SE4| Staphylococcal Enterotoxin B Complexed With Lactose
pdb|1SE3| Staphylococcal Enterotoxin B Complexed With Gm3 Trisaccharide
pdb|1SBB|B Chain B, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1D5Z|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D5M|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D6E|C Chain C, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|2SEB|D Chain D, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
Length = 239
Score = 28.1 bits (61), Expect = 1.0
Identities = 14/54 (25%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Query: 110 IQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNK 163
++++ ++D + K I+++ LYF+ IY+I + + D R+E +NK
Sbjct: 21 MENMKVLYDDNHVSAINVKSIDQF---LYFDLIYSIKDTKLGNYDNVRVEFKNK 71
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
pdb|1GOZ|B Chain B, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 28.1 bits (61), Expect = 1.0
Identities = 14/54 (25%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Query: 110 IQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNK 163
++++ ++D + K I+++ LYF+ IY+I + + D R+E +NK
Sbjct: 21 MENMKVLYDDNHVSAINVKSIDQF---LYFDLIYSIKDTKLGNYDNVRVEFKNK 71
>pdb|3SEB| Staphylococcal Enterotoxin B
Length = 238
Score = 28.1 bits (61), Expect = 1.0
Identities = 14/54 (25%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Query: 110 IQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNK 163
++++ ++D + K I+++ LYF+ IY+I + + D R+E +NK
Sbjct: 21 MENMKVLYDDNHVSAINVKSIDQF---LYFDLIYSIKDTKLGNYDNVRVEFKNK 71
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 27.7 bits (60), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 7/62 (11%)
Query: 181 KLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDH 240
K QE E+ QTR + AT ++L+D L+ E + I S+ FE +D LD
Sbjct: 41 KYAQEIEALKEQTRSMLLATGRKLADTLN------LIDIIERLGI-SYHFEKEIDEILDQ 93
Query: 241 LY 242
+Y
Sbjct: 94 IY 95
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 27.7 bits (60), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 7/62 (11%)
Query: 181 KLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDH 240
K QE E+ QTR + AT ++L+D L+ E + I S+ FE +D LD
Sbjct: 41 KYAQEIEALKEQTRSMLLATGRKLADTLN------LIDIIERLGI-SYHFEKEIDEILDQ 93
Query: 241 LY 242
+Y
Sbjct: 94 IY 95
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 27.3 bits (59), Expect = 1.7
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 7/62 (11%)
Query: 181 KLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDH 240
K +E E+ QTR + AT +L+D L+ T E + I S+ FE +D LD
Sbjct: 41 KYAKEIEALKEQTRNMLLATGMKLADTLN------LIDTIERLGI-SYHFEKEIDDILDQ 93
Query: 241 LY 242
+Y
Sbjct: 94 IY 95
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 27.3 bits (59), Expect = 1.7
Identities = 46/186 (24%), Positives = 75/186 (39%), Gaps = 23/186 (12%)
Query: 36 IRKNDAREIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKL 95
IR + IIF S WIR + D + ++ N EYT KNN+ K+
Sbjct: 908 IRVTQNQNIIFNSVFLDFSVSFWIRIPKYKND--GIQNYIHN--EYTIINCMKNNSGWKI 963
Query: 96 TSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAE--KIY--- 150
+ ++ + + DI+ SVF ++ I EY ++ +F TI N KIY
Sbjct: 964 S----IRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYING 1019
Query: 151 ------NDKDRNRIELQNKIIFSIVIRLKSEE--WM--LNKLNQEFESTNNQTRELYDAT 200
+ KD + +IIF + + + WM + N E +N + R +
Sbjct: 1020 KLESNTDIKDIREVIANGEIIFKLDGDIDRTQFIWMKYFSIFNTELSQSNIEERYKIQSY 1079
Query: 201 KKELSD 206
+ L D
Sbjct: 1080 SEYLKD 1085
>pdb|1B48|A Chain A, Crystal Structure Of Mgsta4-4 In Complex With Gsh
Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
The Other: Evidence Of Signaling Across Dimer Interface
In Mgsta4-4
pdb|1B48|B Chain B, Crystal Structure Of Mgsta4-4 In Complex With Gsh
Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
The Other: Evidence Of Signaling Across Dimer Interface
In Mgsta4-4
Length = 221
Score = 27.3 bits (59), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 171 RLKSEEWMLNKLNQEFESTNNQTRELYDATKKE 203
R++S W+L EFE +TRE Y+ +K+
Sbjct: 14 RMESIRWLLAAAGVEFEEEFLETREQYEKMQKD 46
>pdb|1GUK|A Chain A, Crystal Structure Of Murine Alpha-Class Gsta4-4
pdb|1GUK|B Chain B, Crystal Structure Of Murine Alpha-Class Gsta4-4
Length = 222
Score = 27.3 bits (59), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 171 RLKSEEWMLNKLNQEFESTNNQTRELYDATKKE 203
R++S W+L EFE +TRE Y+ +K+
Sbjct: 15 RMESIRWLLAAAGVEFEEEFLETREQYEKMQKD 47
>pdb|4MDH|A Chain A, Cytoplasmic Malate Dehydrogenase (E.C.1.1.1.37)
pdb|4MDH|B Chain B, Cytoplasmic Malate Dehydrogenase (E.C.1.1.1.37)
Length = 334
Score = 26.9 bits (58), Expect = 2.2
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 154 DRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEK 209
D N + + +++S + +K + W + E N+ +RE D T KEL+++++
Sbjct: 274 DGNSYGVPDDLLYSFPVTIKDKTWKI----VEGLPINDFSREKMDLTAKELAEEKE 325
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 26.9 bits (58), Expect = 2.2
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 154 DRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEK 209
D N + + +++S + +K + W + E N+ +RE D T KEL+++++
Sbjct: 273 DGNSYGVPDDLLYSFPVTIKDKTWKI----VEGLPINDFSREKMDLTAKELAEEKE 324
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 26.6 bits (57), Expect = 2.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 87 DKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVF 121
D N+N I T KKD KDIQ+ +K+ S++
Sbjct: 281 DDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIY 315
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 26.6 bits (57), Expect = 2.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 87 DKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVF 121
D N+N I T KKD KDIQ+ +K+ S++
Sbjct: 281 DDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIY 315
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 26.6 bits (57), Expect = 2.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 87 DKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVF 121
D N+N I T KKD KDIQ+ +K+ S++
Sbjct: 281 DDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIY 315
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia
Coli
Length = 365
Score = 26.2 bits (56), Expect = 3.8
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 109 QIQDISKIFDSVFGA---ERKKKKIEEYNSKLYFETIYNIAEKIYN-DKDRNRIELQNKI 164
+IQD+++ D + G + KK+++EE N++L ++N E+ K+R+ +E
Sbjct: 10 RIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDT 69
Query: 165 IFSIVIRLKSEEWMLN-KLNQEFESTNNQTRELYDATKKELSDDEKR 210
+ L+ +L + + E T N+ DA +++L+ E R
Sbjct: 70 LDQXKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFR 116
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 25.8 bits (55), Expect = 5.0
Identities = 20/101 (19%), Positives = 45/101 (43%), Gaps = 6/101 (5%)
Query: 45 IFEKGGYLKSFIKWIRDSEDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKD 104
+F++ G + ++ ++ + +KD T+I FV I + ++A + +K+
Sbjct: 611 VFDREGLKECYVFKPKNPDMEKDCPTIIHFVLANINFRKYKAP------GVPRETEEEKE 664
Query: 105 TKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNI 145
D I D + S F + + + + ++F T+ NI
Sbjct: 665 IADFDIFDDPESPFSTFNFQYPNQAFKRLHDLMHFNTLNNI 705
>pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
pdb|1FZP|D Chain D, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
Length = 123
Score = 25.8 bits (55), Expect = 5.0
Identities = 13/60 (21%), Positives = 29/60 (47%)
Query: 133 YNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQ 192
Y + + ++++ Y DK RN + + +I + K E +L+++N+ NN+
Sbjct: 61 YKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNE 120
>pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
Length = 477
Score = 25.4 bits (54), Expect = 6.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 10 LVMTHNFDFYRTLESRLSIPRKQIKMIRKNDAREIIFEKGGYLKSFI--KWIRDSEDDKD 67
++MTH D L RL+ + I I K+++RE + E L+ + + +R DD+D
Sbjct: 269 IIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRD 328
Query: 68 FFT 70
T
Sbjct: 329 QHT 331
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 25.4 bits (54), Expect = 6.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 66 KDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVFGAER 125
KDF TL +LI Y SFQ K ++ C+H ++I + + + + FG R
Sbjct: 142 KDFLTL----EHLICY-SFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLAR 196
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 25.0 bits (53), Expect = 8.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 172 LKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFE 231
LKS + ++++N + +T E + +KE S+ E RI + I + S+ E
Sbjct: 359 LKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 418
Query: 232 PILDTSLDH 240
++ H
Sbjct: 419 LLVALENQH 427
>pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Bifunctional
Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 25.0 bits (53), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 30 RKQIKMIRKNDAREIIFEKGGYLKSF 55
RKQ + ND R+ + E+GG++ F
Sbjct: 103 RKQCALAALNDVRKFLSEEGGHVAVF 128
>pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|F Chain F, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|B Chain B, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
Length = 138
Score = 25.0 bits (53), Expect = 8.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 172 LKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFE 231
LKS + ++++N + +T E + +KE S+ E RI + I + S+ E
Sbjct: 1 LKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 60
Query: 232 PILDTSLDH 240
++ H
Sbjct: 61 LLVALENQH 69
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 TIY-NIAEKIYNDKDRNRIELQNKIIFSIVIRLK 173
T+Y N+ YN KD+ I+ + IFS+ RLK
Sbjct: 97 TVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLK 130
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 25.0 bits (53), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 43 EIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPFVRNLIE 80
+I+ GG S+ +W++D + FF + VRN +E
Sbjct: 337 DILANAGGVTVSYFEWVQDLQ---SFFWDLDQVRNALE 371
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 25.0 bits (53), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 43 EIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPFVRNLIE 80
+I+ GG S+ +W++D + FF + VRN +E
Sbjct: 338 DILANAGGVTVSYFEWVQDLQ---SFFWDLDQVRNALE 372
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 25.0 bits (53), Expect = 8.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 172 LKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFE 231
LKS + ++++N + +T E + +KE S+ E RI + I + S+ E
Sbjct: 8 LKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 67
Query: 232 PILDTSLDH 240
++ H
Sbjct: 68 LLVALENQH 76
>pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|D Chain D, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|F Chain F, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
Length = 175
Score = 25.0 bits (53), Expect = 8.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 172 LKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFE 231
LKS + ++++N + +T E + +KE S+ E RI + I + S+ E
Sbjct: 38 LKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 97
Query: 232 PILDTSLDH 240
++ H
Sbjct: 98 LLVALENQH 106
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 25.0 bits (53), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 30 RKQIKMIRKNDAREIIFEKGGYLKSF 55
RKQ + ND R+ + E+GG++ F
Sbjct: 103 RKQCALAALNDVRKFLSEEGGHVAVF 128
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 25.0 bits (53), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 43 EIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPFVRNLIE 80
+I+ GG S+ +W++D + FF + VRN +E
Sbjct: 337 DILANAGGVTVSYFEWVQDLQ---SFFWDLDQVRNALE 371
>pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1HGE|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGH|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|B Chain B, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|D Chain D, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|F Chain F, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGD|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1HGG|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|3HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|1HGF|B Chain B, Hemagglutinin (Bromelain Digested)
pdb|1HGF|D Chain D, Hemagglutinin (Bromelain Digested)
pdb|1HGF|F Chain F, Hemagglutinin (Bromelain Digested)
pdb|2HMG|B Chain B, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|D Chain D, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|F Chain F, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 175
Score = 25.0 bits (53), Expect = 8.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 172 LKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFE 231
LKS + ++++N + +T E + +KE S+ E RI + I + S+ E
Sbjct: 38 LKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 97
Query: 232 PILDTSLDH 240
++ H
Sbjct: 98 LLVALENQH 106
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 25.0 bits (53), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 30 RKQIKMIRKNDAREIIFEKGGYLKSF 55
RKQ + ND R+ + E+GG++ F
Sbjct: 102 RKQCALAALNDVRKFLSEEGGHVAVF 127
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,376,857
Number of Sequences: 13198
Number of extensions: 54140
Number of successful extensions: 131
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 34
length of query: 250
length of database: 2,899,336
effective HSP length: 86
effective length of query: 164
effective length of database: 1,764,308
effective search space: 289346512
effective search space used: 289346512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)