BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646129|ref|NP_208311.1| hypothetical protein
[Helicobacter pylori 26695]
(430 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 35 0.012
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 29 0.89
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 29 0.89
pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv... 29 1.2
pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif 29 1.2
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose... 28 1.5
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 28 1.5
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 28 1.5
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 28 2.0
pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed ... 28 2.6
pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 3.4
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 27 4.4
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 27 4.4
pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolas... 27 4.4
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring ... 27 4.4
pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease R... 27 5.8
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 27 5.8
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolob... 27 5.8
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 26 7.6
pdb|1IVZ|A Chain A, Solution Structure Of The Sea Domain Fr... 26 7.6
pdb|2DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (D... 26 7.6
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 26 7.6
pdb|1DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (D... 26 7.6
pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-C... 26 9.9
pdb|1J8H|D Chain D, Crystal Structure Of A Complex Of A Hum... 26 9.9
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 35.4 bits (80), Expect = 0.012
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 230 KKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINAN 289
K + + + F K KIAG Y + IF EK R ++ +++++IE V+
Sbjct: 390 KDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFSQEKKRKISIFRGIQAYNEIENVL--- 446
Query: 290 KELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEIEEII 349
K + E+ +Y F YLK+ I N L+ +++ E + +
Sbjct: 447 -----------KSKQIAPEYKNY--------FQYLKERITNQVQLLLTHQKSNIEFKLLY 487
Query: 350 KQASKDQKEWESVIEIFNQ 368
KQ + + E ++ E+F +
Sbjct: 488 KQLNFTENETDN-FEVFQK 505
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 29.3 bits (64), Expect = 0.89
Identities = 50/215 (23%), Positives = 99/215 (45%), Gaps = 24/215 (11%)
Query: 182 SKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKA 241
++ VK F N + L YFN+ K+ HM G ++ D + N F
Sbjct: 200 AEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQ--GISYDDRIGMHYNNPSFGYG 257
Query: 242 NHSL-KIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAIS 300
+SL K + + NY ++I + I+++ +++S+ +++IN KE ++ +
Sbjct: 258 GYSLPKDTKQLLANY---NNIPQTLIEAIVSSNNVRKSY-IAKQIINVLKEQESPVKVVG 313
Query: 301 KDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEIEE--IIKQASKDQKE 358
++ + D+FR+ S +K VI +KS ++ K I E + K S+DQ
Sbjct: 314 VYRLIMKS--NSDNFRE----SAIKDVIDILKS-----KDIKIIIYEPMLNKLESEDQSV 362
Query: 359 WESVIEIFNQRFLV----PFKVELQNQKDILLNKD 389
+ +E F ++ + + ELQ+ K+ + ++D
Sbjct: 363 LVNDLENFKKQANIIVTNRYDNELQDVKNKVYSRD 397
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 29.3 bits (64), Expect = 0.89
Identities = 34/127 (26%), Positives = 55/127 (42%), Gaps = 21/127 (16%)
Query: 219 GDFGTNHADDLKKALE---NNRFFK-ANHSLKIAGEEITNYQKL---SDIFENEK----N 267
G G AD++K N R K A ++K+ + NY SD++EN K N
Sbjct: 64 GVIGIALADEVKSTTXADINRRAIKLAKENIKL--NNLDNYDIRVVHSDLYENVKDRKYN 121
Query: 268 RILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQV 327
+I+ N ++ + + ++I KEL KDN + + K L Y K V
Sbjct: 122 KIITNPPIRAGKEVLHRIIEEGKEL-------LKDNGEIWVVIQTKQGAKS-LAKYXKDV 173
Query: 328 IQNVKSL 334
NV+++
Sbjct: 174 FGNVETV 180
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 324 LKQVIQNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRFLVPFKVEL 378
+K + K +V Y++ ++E K+ ++E++S+I +N F+ K +
Sbjct: 275 VKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNI 329
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
Length = 152
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 324 LKQVIQNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRFLVPFKVEL 378
+K + K +V Y++ ++E K+ ++E++S+I +N F+ K +
Sbjct: 79 VKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNI 133
>pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 28.5 bits (62), Expect = 1.5
Identities = 27/134 (20%), Positives = 59/134 (43%), Gaps = 31/134 (23%)
Query: 139 EEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKK--VKDFVNKHHDLI 196
++E K + + K F + + E+ +H+S++ D+ D + +K+ + + D
Sbjct: 51 DDEFKQLVRDSIKDFTD----DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKF 106
Query: 197 E-------------QYFN------KYQELLSQSKIFKHMNSGDFGTNH------ADDLKK 231
+ ++F K + LL+ + + M FGT++ +DL+
Sbjct: 107 DIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLEN 166
Query: 232 ALENNRFFKANHSL 245
A ++N+ F+ NH L
Sbjct: 167 AFDDNQLFRINHYL 180
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 28.5 bits (62), Expect = 1.5
Identities = 29/143 (20%), Positives = 59/143 (40%), Gaps = 15/143 (10%)
Query: 154 YEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIF 213
+ I+ + E+ + YS + G+K DF + L++Q +L +I
Sbjct: 229 WRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 288
Query: 214 KHMNSGDFGTNHADD---LKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEK---N 267
+ +G D +K L + + +++ G T YQ+ S+IFE ++
Sbjct: 289 TIIGAGAASGGQVDAANLIKPLLSSGK-------IRVIGS--TTYQEFSNIFEKDRALAR 339
Query: 268 RILNNEELKESFDKIEKVINANK 290
R + + S ++ ++IN K
Sbjct: 340 RFQKIDITEPSIEETVQIINGLK 362
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 28.5 bits (62), Expect = 1.5
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 24/135 (17%)
Query: 39 FKTSFAK-SLTDLINNEMPKDNFYPNRKSKIE--IEFNGEKILKENVAVFHSYDEE---- 91
+K F K + L+ +E P+D+ R+ ++E I ++L++ F D E
Sbjct: 23 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA 82
Query: 92 ------FSSEDSVTTFMAKSDLKQQYDN---------ILLELEKEKKALLKSLRDIASGF 136
+ EDS+ F K D +YD LL++ ++ L++ R++ +
Sbjct: 83 VAKKLGLTEEDSIYVF--KEDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFE 140
Query: 137 DYEEEIKTIKNEKNK 151
+ E+EIK I KNK
Sbjct: 141 NIEDEIKLIGYFKNK 155
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 28.1 bits (61), Expect = 2.0
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 13/152 (8%)
Query: 116 LELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEIL--DNHLTEIESSEKHYSF 173
L ++K + K + G EE ++T K IL D LTE E +
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 174 KYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKAL 233
K +K + + K+ ++EQ YQE L Q + + M N L K
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ--LTEKME------NDRVQLLKEQ 546
Query: 234 ENNRFFKANHSLKIAGEEITNYQKLSDIFENE 265
E K ++ E +QK S I +NE
Sbjct: 547 ERTLALKLQEQEQLLKE---GFQKESRIMKNE 575
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 27.7 bits (60), Expect = 2.6
Identities = 24/105 (22%), Positives = 47/105 (43%), Gaps = 16/105 (15%)
Query: 242 NHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISK 301
N+ LK E++ N ++ F N+ R +++L FD E N+EL+A ++
Sbjct: 15 NNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKE-----NEELEALNIEVAV 69
Query: 302 DNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLY--REKKPE 344
++T ++++ +Q+V + LY R+ PE
Sbjct: 70 AGRMMT---------RRIMGKASFVTLQDVGGRIQLYVARDDLPE 105
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 27.3 bits (59), Expect = 3.4
Identities = 49/215 (22%), Positives = 98/215 (44%), Gaps = 24/215 (11%)
Query: 182 SKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKA 241
++ VK F N + L YFN+ K+ HM G ++ D + N F
Sbjct: 200 AEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQ--GISYDDRIGMHYNNPSFGYG 257
Query: 242 NHSL-KIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAIS 300
+ L K + + NY ++I + I+++ +++S+ +++IN KE ++ +
Sbjct: 258 GYCLPKDTKQLLANY---NNIPQTLIEAIVSSNNVRKSY-IAKQIINVLKEQESPVKVVG 313
Query: 301 KDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEIEE--IIKQASKDQKE 358
++ + D+FR+ S +K VI +KS ++ K I E + K S+DQ
Sbjct: 314 VYRLIMKS--NSDNFRE----SAIKDVIDILKS-----KDIKIIIYEPMLNKLESEDQSV 362
Query: 359 WESVIEIFNQRFLV----PFKVELQNQKDILLNKD 389
+ +E F ++ + + ELQ+ K+ + ++D
Sbjct: 363 LVNDLENFKKQANIIVTNRYDNELQDVKNKVYSRD 397
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.9 bits (58), Expect = 4.4
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 31/182 (17%)
Query: 139 EEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDL--- 195
E + + +E+ KS Y N L + ++K S + RD D + V+ F+N H +
Sbjct: 756 EAREQRLGSEQTKSDYLKRANELVQW-INDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814
Query: 196 -----------IEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKANHS 244
+E +N Q L K + N D ALE A +
Sbjct: 815 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA-EA 873
Query: 245 LKIAGEEITNYQKLSDIFENEKNRILNNEE-----------LKESFDKIEKVINANKELK 293
L+I E+ +K++ + + + NRIL E E+ D I V K L+
Sbjct: 874 LRI---ELKRQKKIAVLLQ-KYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE 929
Query: 294 AF 295
AF
Sbjct: 930 AF 931
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 26.9 bits (58), Expect = 4.4
Identities = 25/115 (21%), Positives = 50/115 (42%), Gaps = 13/115 (11%)
Query: 103 AKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLT 162
AK L +Q+D +L E + + ++S + E K + + F IL HL
Sbjct: 643 AKEKLARQHDGVLEEQIERLQEKVESA---------QSEQKNLFLVIFQRFIMILTEHLV 693
Query: 163 EIESSEKHYSFK-YRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHM 216
E+ Y++ + +++ +HH +I+QY + LL +++ H+
Sbjct: 694 RCETDGTSVLTPWYKNCIE---RLQQIFLQHHQIIQQYMVTLENLLFTAELDPHI 745
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase
pdb|1F05|B Chain B, Crystal Structure Of Human Transaldolase
Length = 337
Score = 26.9 bits (58), Expect = 4.4
Identities = 15/49 (30%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 259 SDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDA-ISKDNTLL 306
++I + R+ + + SFDK V A + ++ +K+A ISKD L+
Sbjct: 93 AEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGISKDRILI 141
>pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
Length = 154
Score = 26.9 bits (58), Expect = 4.4
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 326 QVIQNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRF 370
QVIQ++ +LVN + + P ++ ++ SKD+K++ E F +++
Sbjct: 103 QVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 26.6 bits (57), Expect = 5.8
Identities = 17/62 (27%), Positives = 31/62 (49%), Gaps = 11/62 (17%)
Query: 177 DIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDF---GTNHADDLKKAL 233
D +D ++ +D V+ YF K +L SQ ++K +S GT A +++ A+
Sbjct: 119 DCYDNYEEGEDIVD--------YFQKAMDLRSQYNVYKAFSSNGITPGGTYTATEMQSAI 170
Query: 234 EN 235
E+
Sbjct: 171 ES 172
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 26.6 bits (57), Expect = 5.8
Identities = 15/48 (31%), Positives = 25/48 (51%)
Query: 119 EKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIES 166
+ KKA+LK+ D G D E++ +K+ E+L N + E+ S
Sbjct: 116 DNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTS 163
>pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
Length = 354
Score = 26.6 bits (57), Expect = 5.8
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 20/156 (12%)
Query: 126 LKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTE-IESSEKHYSFKYRDIFDGSKK 184
++ LRDI S +Y E K K ++ N +E +E+ K +Y + ++
Sbjct: 200 IQKLRDILSK-NYNELEKITGKAKALYLLKLAQNKYSEPVENKSKIPHGRYLTLPYNTRD 258
Query: 185 VKDFVNKHHDLIEQYFNKYQ---------------ELLSQSKIFKHMNSGDFGTNHADDL 229
VK + I + +NK ++LS+ K FKH S D A+DL
Sbjct: 259 VKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDL 318
Query: 230 KKAL--ENNRFFKANHSLKIAGEEITNYQKLSDIFE 263
+ L + R +K+ I N LSD F+
Sbjct: 319 LRELLVRDKRRNVRRIGVKL-DNIIINKTNLSDFFD 353
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.2 bits (56), Expect = 7.6
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 47/231 (20%)
Query: 85 FHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKT 144
+ + + S E + ++ + D+I+ L +E+K LLK ++ +S F EE +
Sbjct: 278 YQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEF 337
Query: 145 IK-----------NEKNKSFYEILDNHLTEIESSEKHYSFKYR-DI--FDGSKKVK---- 186
+K E+ + I + + EK + K + DI +D +++++
Sbjct: 338 LKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGG 397
Query: 187 --DFVNKHHDLIEQYFNKYQE---LLSQS---------KIFKHMNSGDFGTNHADDLKKA 232
D + + D+ +QY Q LL QS ++++MN + DL +
Sbjct: 398 LIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDS 457
Query: 233 LENNRF-------FKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELK 276
+N + FK N I+ +NY I + + L+NE LK
Sbjct: 458 TDNTKINRGIFNEFKKNFKYSIS----SNYM----IVDINERPALDNERLK 500
Score = 25.8 bits (55), Expect = 9.9
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 90 EEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEK 149
EE + ++ + +KQ Y + L +E + LLK L+ I ++ I ++ E+
Sbjct: 257 EELKDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQ-IPIEPKKDDIIHSLSQEE 315
Query: 150 NKSFYEILDNHLTEIESSEKHYSFKYR-DIFDG-SKKVKDFVNK-HHDLIEQYFNKYQEL 206
+ I + + + EK + K + DI D S++ K+ +N+ D K +E
Sbjct: 316 KELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEF 375
Query: 207 LSQSKI 212
L + K+
Sbjct: 376 LKKLKL 381
>pdb|1IVZ|A Chain A, Solution Structure Of The Sea Domain From Murine
Hypothetical Protein Homologous To Human Mucin 16
Length = 132
Score = 26.2 bits (56), Expect = 7.6
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 243 HSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISKD 302
+S IA T YQ+ EN N++ N +K F ++ ++ AF+ + +
Sbjct: 25 YSQDIAQPSTTKYQQTKRSIENALNQLFRNSSIKSYF--------SDCQVLAFRSVSNNN 76
Query: 303 N-TLLTEFLDYDSFRKKV----LFSYLKQVIQNVKSLVNLYREKK 342
N T + ++ ++V ++ ++ N L+N ++K
Sbjct: 77 NHTGVDSLCNFSPLARRVDRVAIYEEFLRMTHNGTQLLNFTLDRK 121
>pdb|2DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (Dynph)
pdb|2DYN|B Chain B, Dynamin (Pleckstrin Homology Domain) (Dynph)
Length = 122
Score = 26.2 bits (56), Expect = 7.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 119 EKEKKALLK----SLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFK 174
EKEKK +L LRD+ GF + I + N + ++ Y+ E+ E+ S+K
Sbjct: 50 EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWK 109
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 26.2 bits (56), Expect = 7.6
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Query: 266 KNRILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLK 325
+ +I + LKES + K I E K D I ++ + +K++ S+++
Sbjct: 119 EKQIAELKALKESSESNIKDIKKKLEAKRL-DRIQVXXRSTSDKAAQERLKKEINNSHIQ 177
Query: 326 QVIQNVKSLVNLYREKKPEIEEIIKQA 352
+V+Q +K L + ++EE KQA
Sbjct: 178 EVVQTIKLLTEKTARYQQKLEE--KQA 202
>pdb|1DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (Dynph)
pdb|1DYN|B Chain B, Dynamin (Pleckstrin Homology Domain) (Dynph)
Length = 125
Score = 26.2 bits (56), Expect = 7.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 119 EKEKKALLK----SLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFK 174
EKEKK +L LRD+ GF + I + N + ++ Y+ E+ E+ S+K
Sbjct: 50 EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWK 109
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-Coa Oxidase-Ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-Coa Oxidase-Ii From
Rat Liver
Length = 661
Score = 25.8 bits (55), Expect = 9.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 89 DEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNE 148
D +F ED F+ +S Q+Y+ + K+ ++K +R+ G EEI KN
Sbjct: 43 DPDFQHEDY--NFLTRS---QRYEVAV----KKSATMVKKMREY--GISDPEEIMWFKNS 91
Query: 149 KNKSFYEILDNHL 161
++ E LD HL
Sbjct: 92 VHRGHPEPLDLHL 104
>pdb|1J8H|D Chain D, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
pdb|1FYT|D Chain D, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 212
Score = 25.8 bits (55), Expect = 9.9
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 21 SLDFSKSNSYLLYAQNGVFKTSFAKSLTDLINNEMPKDNFYPNRKSKIEIE 71
S+DF KSNS + ++ F + A + N+ +P+D F+P+ +S +++
Sbjct: 168 SMDF-KSNSAVAWSNKSDFACANAFN-----NSIIPEDTFFPSPESSCDVK 212
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,398,341
Number of Sequences: 13198
Number of extensions: 102866
Number of successful extensions: 282
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 33
length of query: 430
length of database: 2,899,336
effective HSP length: 91
effective length of query: 339
effective length of database: 1,698,318
effective search space: 575729802
effective search space used: 575729802
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)