BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644783|ref|NP_206953.1| enolase (eno) [Helicobacter
pylori 26695]
(426 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E9I|D Chain D, Enolase From E.Coli >gi|16975437|pdb|1E... 425 e-120
pdb|1PDZ| Mol_id: 1; Molecule: Enolase; Chain: Null; Syno... 356 2e-99
pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate H... 351 1e-97
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilib... 350 1e-97
pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of... 349 3e-97
pdb|1EB7|A Chain A, Crystal Structure Of The Di-Haem Cytoch... 31 0.30
pdb|1CHR|A Chain A, Chloromuconate Cycloisomerase (E.C.5.5.... 30 0.52
pdb|1NFI|C Chain C, I-Kappa-B-AlphaNF-Kappa-B Complex >gi|4... 28 1.5
pdb|1VKX|A Chain A, Crystal Structure Of The Nfkb P50P65 HE... 28 1.5
pdb|1BFT|A Chain A, Structure Of Nf-Kb P50 Homodimer Bound ... 28 1.5
pdb|1K3Z|A Chain A, X-Ray Crystal Structure Of The IkbbNF-K... 28 1.5
pdb|2RAM|A Chain A, A Novel Dna Recognition Mode By Nf-Kb P... 28 1.5
pdb|1IKN|A Chain A, IkappabalphaNF-Kappab Complex 28 1.5
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudo... 27 4.4
pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudo... 27 4.4
pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i >... 27 4.4
pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzym... 27 4.4
pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudo... 27 4.4
pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant ... 27 4.4
pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v >g... 27 4.4
pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad... 26 7.5
pdb|1KHO|A Chain A, Crystal Structure Analysis Of Clostridi... 26 7.5
pdb|1GER|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Com... 26 7.5
pdb|1JPM|C Chain C, L-Ala-DL-Glu Epimerase >gi|18158850|pdb... 26 9.8
pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna... 26 9.8
>pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
Length = 431
Score = 425 bits (1092), Expect = e-120
Identities = 220/407 (54%), Positives = 293/407 (71%), Gaps = 6/407 (1%)
Query: 11 EVMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDNDKTRFLGKGVLRACEN 70
E++DSRGNPT++A V L A PSGASTG REALELRD DK+RFLGKGV +A
Sbjct: 10 EIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAA 69
Query: 71 VNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL 130
VN I LIG +A +QA +D+ + LDGT N + GANA+L VS+A A+A+A A +PL
Sbjct: 70 VNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPL 129
Query: 131 YRYLGGANAL----TLPVPMLNIINGGTHANNSIDFQEYMIMPLGFESFKEALRASAEVY 186
Y ++ N ++PVPM+NIINGG HA+N++D QE+MI P+G ++ KEA+R +EV+
Sbjct: 130 YEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVF 189
Query: 187 HTLKKLLDGKNQLTSVGDEGGFAPNFSNNVEPLEVISQAIEKAGYKLGEEIALALDVASS 246
H L K+L K T+VGDEGG+APN +N E L VI++A++ AGY+LG++I LA+D A+S
Sbjct: 190 HHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAAS 249
Query: 247 ELVDENFNYHLKGE-NKILDSHELVAYYKELVAKYPIVSIEDGLSEDDWEGWAFLSKELG 305
E + Y L GE NK S E + +EL +YPIVSIEDGL E DW+G+A+ +K LG
Sbjct: 250 EFYKDG-KYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLG 308
Query: 306 RQIQLVGDDLFVTNASLLQKGIEKNIANAVLIKPNQIGTISETLETIRLAKHHAYQCVMS 365
+IQLVGDDLFVTN +L++GIEK IAN++LIK NQIG+++ETL I++AK Y V+S
Sbjct: 309 DKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVIS 368
Query: 366 HRSGESEDSFIADFAVALNTGEIKTGSTARSERIAKYNRLLEIEHEL 412
HRSGE+ED+ IAD AV G+IKTGS +RS+R+AKYN+L+ IE L
Sbjct: 369 HRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEAL 415
>pdb|1PDZ| Mol_id: 1; Molecule: Enolase; Chain: Null; Synonym:
2-Phospho-D-Glycerate Dehydratase; Ec: 4.2.1.11;
Heterogen: Phosphoglycolate; Heterogen: Mn 2+
pdb|1PDY| Mol_id: 1; Molecule: Enolase; Chain: Null; Synonym:
2-Phospho-D-Glycerate Dehydratase; Ec: 4.2.1.11
Length = 434
Score = 356 bits (914), Expect = 2e-99
Identities = 201/436 (46%), Positives = 275/436 (62%), Gaps = 20/436 (4%)
Query: 3 TIKDIHALEVMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDNDKTRFLGK 62
+I + A + DSRGNPT++ + S +A VPSGASTG EALE+RD DK+++ GK
Sbjct: 2 SITKVFARTIFDSRGNPTVEVDLYTSKGLFRAA-VPSGASTGVHEALEMRDGDKSKYHGK 60
Query: 63 GVLRACENVNSVIKHHLI--GLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALAR 120
V A +NVN VI +I GL+ Q DE + LDGT N ++LGANA+LGVS+A+ +
Sbjct: 61 SVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICK 120
Query: 121 ASAKALNLPLYRY---LGGANALTLPVPMLNIINGGTHANNSIDFQEYMIMPLGFESFKE 177
A A L +PLYR+ L + + LPVP N+INGG+HA N + QE+MI+P G SF E
Sbjct: 121 AGAAELGIPLYRHIANLANYDEVILPVPAFNVINGGSHAGNKLAMQEFMILPTGATSFTE 180
Query: 178 ALRASAEVYHTLKKLLDGKNQL--TSVGDEGGFAPNFSNNVEPLEVISQAIEKAGYKLGE 235
A+R EVYH LK ++ + L T+VGDEGGFAPN NN + L++I +AI+KAGY
Sbjct: 181 AMRMGTEVYHHLKAVIKARFGLDATAVGDEGGFAPNILNNKDALDLIQEAIKKAGYT--G 238
Query: 236 EIALALDVASSELVDENFNYHLK-------GENKILDSHELVAYYKELVAKYPIVSIEDG 288
+I + +DVA+SE +N Y L G KI +L Y E +PIVSIED
Sbjct: 239 KIEIGMDVAASEFYKQNNIYDLDFKTANNDGSQKI-SGDQLRDMYMEFCKDFPIVSIEDP 297
Query: 289 LSEDDWEGWAFLSKELGRQIQLVGDDLFVTNASLLQKGIEKNIANAVLIKPNQIGTISET 348
+DDWE W+ ++ G IQ+VGDDL VTN + +EK +L+K NQIG+++E+
Sbjct: 298 FDQDDWETWSKMTS--GTTIQIVGDDLTVTNPKRITTAVEKKACKCLLLKVNQIGSVTES 355
Query: 349 LETIRLAKHHAYQCVMSHRSGESEDSFIADFAVALNTGEIKTGSTARSERIAKYNRLLEI 408
++ LAK + + ++SHRSGE+ED FIAD V L TG+IKTG+ RSER+AKYN++L I
Sbjct: 356 IDAHLLAKKNGWGTMVSHRSGETEDCFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRI 415
Query: 409 EHELKGGIYIGKELFK 424
E EL G + F+
Sbjct: 416 EEELGSGAKFAGKNFR 431
>pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Holo)
pdb|5ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Calcium
pdb|6ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Phosphoglycolic Acid And Zinc
pdb|7ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Magnesium
pdb|3ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Apo)
pdb|1ELS| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complexed
With Phosphonoacetohydroxamate And Manganese
pdb|1NEL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Orthophosphate, Fluoride And Magnesium
Length = 436
Score = 351 bits (900), Expect = 1e-97
Identities = 201/437 (45%), Positives = 274/437 (61%), Gaps = 19/437 (4%)
Query: 4 IKDIHALEVMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDNDKTRFLGKG 63
+ ++A V DSRGNPT++ + S IVPSGASTG EALE+RD DK++++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRS-IVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 64 VLRACENVNSVIKHHLI--GLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARA 121
VL A +NVN VI + ++ +Q VD+ L +LDGT N + LGANA+LGVS+A +RA
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVSDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRA 120
Query: 122 SAKALNLPLYRYLGG-----ANALTLPVPMLNIINGGTHANNSIDFQEYMIMPLGFESFK 176
+A N+PLY++L + LPVP LN++NGG+HA ++ QE+MI P G ++F
Sbjct: 121 AAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFA 180
Query: 177 EALRASAEVYHTLKKLLDGKNQLTS--VGDEGGFAPNFSNNVEPLEVISQAIEKAGYKLG 234
EALR +EVYH LK L + ++ VGDEGG APN E L++I AI+ AG+
Sbjct: 181 EALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-- 238
Query: 235 EEIALALDVASSELV-DENFNYHLKGEN----KILDSHELVAYYKELVAKYPIVSIEDGL 289
++ + LD ASSE D ++ K N K L +L Y L+ +YPIVSIED
Sbjct: 239 GKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298
Query: 290 SEDDWEGWAFLSKELGRQIQLVGDDLFVTNASLLQKGIEKNIANAVLIKPNQIGTISETL 349
+EDDWE W+ K G IQ+V DDL VTN + IEK A+A+L+K NQIGT+SE++
Sbjct: 299 AEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 356
Query: 350 ETIRLAKHHAYQCVMSHRSGESEDSFIADFAVALNTGEIKTGSTARSERIAKYNRLLEIE 409
+ + + + ++SHRSGE+ED+FIAD V L TG+IKTG+ ARSER+AK N+LL IE
Sbjct: 357 KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE 416
Query: 410 HELKGGIYIGKELFKHG 426
EL E F HG
Sbjct: 417 EELGDNAVFAGENFHHG 433
>pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1EBH|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|1EBH|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|1EBG|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
pdb|1EBG|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
Length = 436
Score = 350 bits (899), Expect = 1e-97
Identities = 201/437 (45%), Positives = 274/437 (61%), Gaps = 19/437 (4%)
Query: 4 IKDIHALEVMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDNDKTRFLGKG 63
+ ++A V DSRGNPT++ + S IVPSGASTG EALE+RD DK++++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRS-IVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 64 VLRACENVNSVIKHHLI--GLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARA 121
VL A +NVN VI + ++ +Q VD+ L +LDGT N + LGANA+LGVS+A +RA
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRA 120
Query: 122 SAKALNLPLYRYLGG-----ANALTLPVPMLNIINGGTHANNSIDFQEYMIMPLGFESFK 176
+A N+PLY++L + LPVP LN++NGG+HA ++ QE+MI P G ++F
Sbjct: 121 AAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFA 180
Query: 177 EALRASAEVYHTLKKLLDGKNQLTS--VGDEGGFAPNFSNNVEPLEVISQAIEKAGYKLG 234
EALR +EVYH LK L + ++ VGDEGG APN E L++I AI+ AG+
Sbjct: 181 EALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-- 238
Query: 235 EEIALALDVASSELV-DENFNYHLKGEN----KILDSHELVAYYKELVAKYPIVSIEDGL 289
++ + LD ASSE D ++ K N K L +L Y L+ +YPIVSIED
Sbjct: 239 GKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298
Query: 290 SEDDWEGWAFLSKELGRQIQLVGDDLFVTNASLLQKGIEKNIANAVLIKPNQIGTISETL 349
+EDDWE W+ K G IQ+V DDL VTN + IEK A+A+L+K NQIGT+SE++
Sbjct: 299 AEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 356
Query: 350 ETIRLAKHHAYQCVMSHRSGESEDSFIADFAVALNTGEIKTGSTARSERIAKYNRLLEIE 409
+ + + + ++SHRSGE+ED+FIAD V L TG+IKTG+ ARSER+AK N+LL IE
Sbjct: 357 KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE 416
Query: 410 HELKGGIYIGKELFKHG 426
EL E F HG
Sbjct: 417 EELGDNAVFAGENFHHG 433
>pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 349 bits (896), Expect = 3e-97
Identities = 200/437 (45%), Positives = 274/437 (61%), Gaps = 19/437 (4%)
Query: 4 IKDIHALEVMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDNDKTRFLGKG 63
+ ++A V DSRGNPT++ + S IVPSGA+TG EALE+RD DK++++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRS-IVPSGAATGVHEALEMRDGDKSKWMGKG 60
Query: 64 VLRACENVNSVIKHHLI--GLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARA 121
VL A +NVN VI + ++ +Q VD+ L +LDGT N + LGANA+LGVS+A +RA
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRA 120
Query: 122 SAKALNLPLYRYLGG-----ANALTLPVPMLNIINGGTHANNSIDFQEYMIMPLGFESFK 176
+A N+PLY++L + LPVP LN++NGG+HA ++ QE+MI P G ++F
Sbjct: 121 AAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFA 180
Query: 177 EALRASAEVYHTLKKLLDGKNQLTS--VGDEGGFAPNFSNNVEPLEVISQAIEKAGYKLG 234
EALR +EVYH LK L + ++ VGDEGG APN E L++I AI+ AG+
Sbjct: 181 EALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-- 238
Query: 235 EEIALALDVASSELV-DENFNYHLKGEN----KILDSHELVAYYKELVAKYPIVSIEDGL 289
++ + LD ASSE D ++ K N K L +L Y L+ +YPIVSIED
Sbjct: 239 GKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298
Query: 290 SEDDWEGWAFLSKELGRQIQLVGDDLFVTNASLLQKGIEKNIANAVLIKPNQIGTISETL 349
+EDDWE W+ K G IQ+V DDL VTN + IEK A+A+L+K NQIGT+SE++
Sbjct: 299 AEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 356
Query: 350 ETIRLAKHHAYQCVMSHRSGESEDSFIADFAVALNTGEIKTGSTARSERIAKYNRLLEIE 409
+ + + + ++SHRSGE+ED+FIAD V L TG+IKTG+ ARSER+AK N+LL IE
Sbjct: 357 KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE 416
Query: 410 HELKGGIYIGKELFKHG 426
EL E F HG
Sbjct: 417 EELGDNAVFAGENFHHG 433
>pdb|1EB7|A Chain A, Crystal Structure Of The Di-Haem Cytochrome C Peroxidase
From Pseudomonas Aeruginosa
Length = 323
Score = 30.8 bits (68), Expect = 0.30
Identities = 18/55 (32%), Positives = 33/55 (59%), Gaps = 3/55 (5%)
Query: 217 EPLEVISQAIEKAGYKLG-EEIALALDVASSELV--DENFNYHLKGENKILDSHE 268
E ++ +A KAG + + +ALA++ + LV D F+ +LKG++K LD+ +
Sbjct: 131 EYVDAFRKAFPKAGKPVSFDNMALAIEAYEATLVTPDSPFDLYLKGDDKALDAQQ 185
>pdb|1CHR|A Chain A, Chloromuconate Cycloisomerase (E.C.5.5.1.7)
pdb|1CHR|B Chain B, Chloromuconate Cycloisomerase (E.C.5.5.1.7)
pdb|2CHR| Chloromuconate Cycloisomerase (Cmci) (E.C.5.5.1.7)
Length = 370
Score = 30.0 bits (66), Expect = 0.52
Identities = 22/75 (29%), Positives = 33/75 (43%), Gaps = 8/75 (10%)
Query: 71 VNSVIKHHLIGLEAIN-QAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
V + HL+G +A N + RA+ G A+A V MAL A+AL +
Sbjct: 67 VERYLAPHLLGTDAFNVSGALQTMARAVTGN-------ASAKAAVEMALLDLKARALGVS 119
Query: 130 LYRYLGGANALTLPV 144
+ LGG +P+
Sbjct: 120 IAELLGGPLRSAIPI 134
>pdb|1NFI|C Chain C, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|A Chain A, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 301
Score = 28.5 bits (62), Expect = 1.5
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 84 AINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL-YRYL 134
+ +QA V ++ + TP YA+ A + VSM L R S + L+ P+ ++YL
Sbjct: 219 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYL 270
>pdb|1VKX|A Chain A, Crystal Structure Of The Nfkb P50P65 HETERODIMER COMPLEXED
To The Immunoglobulin Kb Dna
Length = 273
Score = 28.5 bits (62), Expect = 1.5
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 84 AINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL-YRYL 134
+ +QA V ++ + TP YA+ A + VSM L R S + L+ P+ ++YL
Sbjct: 220 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYL 271
>pdb|1BFT|A Chain A, Structure Of Nf-Kb P50 Homodimer Bound To A Kb Site
pdb|1BFT|B Chain B, Structure Of Nf-Kb P50 Homodimer Bound To A Kb Site
Length = 101
Score = 28.5 bits (62), Expect = 1.5
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 84 AINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL-YRYL 134
+ +QA V ++ + TP YA+ A + VSM L R S + L+ P+ ++YL
Sbjct: 48 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYL 99
>pdb|1K3Z|A Chain A, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
pdb|1K3Z|B Chain B, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 136
Score = 28.5 bits (62), Expect = 1.5
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 84 AINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL-YRYL 134
+ +QA V ++ + TP YA+ A + VSM L R S + L+ P+ ++YL
Sbjct: 48 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYL 99
>pdb|2RAM|A Chain A, A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer
pdb|2RAM|B Chain B, A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer
pdb|1RAM|A Chain A, A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer
pdb|1RAM|B Chain B, A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer
Length = 273
Score = 28.5 bits (62), Expect = 1.5
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 84 AINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL-YRYL 134
+ +QA V ++ + TP YA+ A + VSM L R S + L+ P+ ++YL
Sbjct: 220 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYL 271
>pdb|1IKN|A Chain A, IkappabalphaNF-Kappab Complex
Length = 286
Score = 28.5 bits (62), Expect = 1.5
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 84 AINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLPL-YRYL 134
+ +QA V ++ + TP YA+ A + VSM L R S + L+ P+ ++YL
Sbjct: 220 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYL 271
>pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 359
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N ++ + LD A A G+ AL A K L LP
Sbjct: 57 NIDAHLAPALIGLAADN---INAAMLKLD---KLAKGNTFAKSGIESALLDAQGKRLGLP 110
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 111 VSELLGG 117
>pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 361
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N ++ + LD A A G+ AL A K L LP
Sbjct: 59 NIDAHLAPALIGLAADN---INAAMLKLD---KLAKGNTFAKSGIESALLDAQGKRLGLP 112
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 113 VSELLGG 119
>pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i
pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i
Length = 373
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N ++ + LD A A G+ AL A K L LP
Sbjct: 70 NIDAHLAPALIGLAADN---INAAMLKLD---KLAKGNTFAKSGIESALLDAQGKRLGLP 123
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 124 VSELLGG 130
>pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
Length = 373
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N ++ + LD A A G+ AL A K L LP
Sbjct: 70 NIDAHLAPALIGLAADN---INAAMLKLD---KLAKGNTFAKSGIESALLDAQGKRLGLP 123
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 124 VSELLGG 130
>pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 358
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N ++ + LD A A G+ AL A K L LP
Sbjct: 56 NIDAHLAPALIGLAADN---INAAMLKLD---KLAKGNTFAKSGIESALLDAQGKRLGLP 109
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 110 VSELLGG 116
>pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant
pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant
Length = 372
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N +L AL +A G + AL A K L LP
Sbjct: 69 NIDAHLAPALIGLAADNINAAMLKLDALAKGNTFAKSG------IESALLDAQGKRLGLP 122
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 123 VSELLGG 129
>pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v
pdb|3MUC|B Chain B, Muconate Cycloisomerase Variant I54v
Length = 369
Score = 26.9 bits (58), Expect = 4.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Query: 70 NVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
N+++ + LIGL A N ++ + LD A A G+ AL A K L LP
Sbjct: 67 NIDAHLAPALIGLAADN---INAAMLKLD---KLAKGNTFAKSGIESALLDAQGKRLGLP 120
Query: 130 LYRYLGG 136
+ LGG
Sbjct: 121 VSELLGG 127
>pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
pdb|1GES|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
Length = 450
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 12 VMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDN 54
V+D N I+ + DNT A + P + G+R + L +N
Sbjct: 286 VVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN 328
>pdb|1KHO|A Chain A, Crystal Structure Analysis Of Clostridium Perfringens
Alpha- Toxin Isolated From Avian Strain Swcp
pdb|1KHO|B Chain B, Crystal Structure Analysis Of Clostridium Perfringens
Alpha- Toxin Isolated From Avian Strain Swcp
Length = 370
Score = 26.2 bits (56), Expect = 7.5
Identities = 16/56 (28%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 289 LSEDDWEGWAFLSKELGRQIQLVGDDLFVTNASLLQKGIEKNIANAVLIKPNQIGT 344
L+ +D+ W SKE R DL+ ++A++ E + A V + +Q GT
Sbjct: 180 LTNEDFNSW---SKEFARSFAKTAKDLYYSHANMSCSWDEWDYAAKVALANSQKGT 232
>pdb|1GER|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Complexed With Fad
pdb|1GET|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Wild-Type Complexed
With Nadp And Fad
pdb|1GER|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Complexed With Fad
pdb|1GET|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Wild-Type Complexed
With Nadp And Fad
Length = 450
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 12 VMDSRGNPTIQASVVLSDNTKASAIVPSGASTGKREALELRDN 54
V+D N I+ + DNT A + P + G+R + L +N
Sbjct: 286 VVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN 328
>pdb|1JPM|C Chain C, L-Ala-DL-Glu Epimerase
pdb|1JPM|A Chain A, L-Ala-DL-Glu Epimerase
pdb|1JPM|B Chain B, L-Ala-DL-Glu Epimerase
pdb|1JPM|D Chain D, L-Ala-DL-Glu Epimerase
Length = 366
Score = 25.8 bits (55), Expect = 9.8
Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 8/67 (11%)
Query: 71 VNSVIKHHLIGLEAIN-QAFVDERLRALDGTPNYANLGANAVLGVSMALARASAKALNLP 129
++ V+K L+G +A + + L G N+ A A V MAL A+ LP
Sbjct: 66 IHHVLKPALLGKSLAGYEAILHDIQHLLTG-----NMSAKAA--VEMALYDGWAQMCGLP 118
Query: 130 LYRYLGG 136
LY+ LGG
Sbjct: 119 LYQMLGG 125
>pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGT|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 667
Score = 25.8 bits (55), Expect = 9.8
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 58 RFLGKGVLRACENVNSVIKHHLIGLEAINQAFVDERLRALDGTPNYA---NLGANAVLGV 114
R L KG++R ++ + K L+GLE + + LR ++ + + L A + GV
Sbjct: 456 RLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGV 515
Query: 115 SMALARASAK 124
LAR A+
Sbjct: 516 GEVLARNLAR 525
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,376,275
Number of Sequences: 13198
Number of extensions: 97380
Number of successful extensions: 218
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 25
length of query: 426
length of database: 2,899,336
effective HSP length: 91
effective length of query: 335
effective length of database: 1,698,318
effective search space: 568936530
effective search space used: 568936530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)