BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646132|ref|NP_208314.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase F... 25 2.8
pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydroge... 25 2.8
pdb|1JB0|A Chain A, Crystal Structure Of Photosystem I: A P... 24 3.7
pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex 24 4.8
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 24 4.8
pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And It... 24 4.8
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 24 4.8
pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And It... 23 6.3
pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porci... 23 6.3
pdb|1IT2|A Chain A, Hagfish Deoxy Hemoglobin >gi|18655671|p... 23 6.3
pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRAN... 23 8.2
pdb|1CG5|A Chain A, Deoxy Form Hemoglobin From Dasyatis Aka... 23 8.2
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 763
Score = 24.6 bits (52), Expect = 2.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 79 EINNEENADPSQKRTNNVLQRATNHQDN 106
E+++ NA S+ ++++++RA H DN
Sbjct: 291 EVDHYSNAGNSRDLSHSIMERALFHMDN 318
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
Length = 1332
Score = 24.6 bits (52), Expect = 2.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 79 EINNEENADPSQKRTNNVLQRATNHQDN 106
E+++ NA S+ ++++++RA H DN
Sbjct: 860 EVDHYSNAGNSRDLSHSIMERALFHMDN 887
>pdb|1JB0|A Chain A, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 755
Score = 24.3 bits (51), Expect = 3.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 87 DPSQKRTNNVLQRATNHQDNLNSPLN 112
DP+ + NNVL R H+D + S LN
Sbjct: 421 DPAMNQ-NNVLDRVLRHRDAIISHLN 445
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 23.9 bits (50), Expect = 4.8
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 49 NDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLN 108
ND RK + E ED + I + + +++++ R ++ + HQD +
Sbjct: 14 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERXSRKXSIQEYELIHQDKED 73
Query: 109 SPLNRKY 115
RKY
Sbjct: 74 EGCLRKY 80
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 23.9 bits (50), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 41 NNPINQANNDIRKIEHEEEDEKATKEVNDLINN 73
N+ I + ND++ +EEDE+++ E + + N
Sbjct: 664 NDEIAEQINDVKGATSDEEDEESSHEDTENVIN 696
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 23.9 bits (50), Expect = 4.8
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 49 NDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLN 108
ND RK + E ED + I + + +++++ R ++ + HQD +
Sbjct: 27 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 86
Query: 109 SPLNRKY 115
RKY
Sbjct: 87 EGCLRKY 93
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 23.9 bits (50), Expect = 4.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 60 DEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLNS 109
D + E+ D +N NK E EEN S + + A NH+ L S
Sbjct: 32 DALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENHKAYLKS 81
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 23.5 bits (49), Expect = 6.3
Identities = 15/67 (22%), Positives = 27/67 (39%)
Query: 49 NDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLN 108
ND RK + E ED + I + + +++++ R + + HQD +
Sbjct: 27 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMEIQEYELIHQDKED 86
Query: 109 SPLNRKY 115
RKY
Sbjct: 87 EGCLRKY 93
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 23.5 bits (49), Expect = 6.3
Identities = 14/69 (20%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Query: 42 NPINQANNDIRKIEH----EEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVL 97
N + + D+ ++H E +KA ++ +L+ +N +++ EN +Q ++ V+
Sbjct: 197 NCLKEDAGDVAFVKHSTVLENLPDKADRDQYELLCRDNTRRPVDDYENCYLAQVPSHAVV 256
Query: 98 QRATNHQDN 106
R+ + Q++
Sbjct: 257 ARSVDGQED 265
>pdb|1IT2|A Chain A, Hagfish Deoxy Hemoglobin
pdb|1IT2|B Chain B, Hagfish Deoxy Hemoglobin
pdb|1IT3|A Chain A, Hagfish Co Ligand Hemoglobin
pdb|1IT3|B Chain B, Hagfish Co Ligand Hemoglobin
pdb|1IT3|C Chain C, Hagfish Co Ligand Hemoglobin
pdb|1IT3|D Chain D, Hagfish Co Ligand Hemoglobin
Length = 146
Score = 23.5 bits (49), Expect = 6.3
Identities = 15/59 (25%), Positives = 26/59 (43%)
Query: 22 KDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEI 80
K KKS+ K N+ N I ++++EE K+ K+++ K+D I
Sbjct: 54 KFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTVFKVDSI 112
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 23.1 bits (48), Expect = 8.2
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 49 NDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLN 108
ND RK + E ED + I + + +++++ R +V + H+D +
Sbjct: 27 NDWRKFKLESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKED 86
Query: 109 SPLNRKY 115
RKY
Sbjct: 87 ENCLRKY 93
>pdb|1CG5|A Chain A, Deoxy Form Hemoglobin From Dasyatis Akajei
pdb|1CG8|A Chain A, Co Form Hemoglobin From Dasyatis Akajei
Length = 141
Score = 23.1 bits (48), Expect = 8.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 91 KRTNNVLQRATNHQDNLN 108
KR N L AT+H DNL+
Sbjct: 61 KRVMNALADATHHLDNLH 78
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.304 0.122 0.325
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,497
Number of Sequences: 13198
Number of extensions: 22495
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 14
length of query: 115
length of database: 2,899,336
effective HSP length: 76
effective length of query: 39
effective length of database: 1,896,288
effective search space: 73955232
effective search space used: 73955232
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (23.1 bits)