BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646133|ref|NP_208315.1| hypothetical protein
[Helicobacter pylori 26695]
         (211 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2ILA|    Interleukin-1Alpha (IL-1Alpha)                        28  1.0
pdb|1BZL|A  Chain A, Crystal Structure Of Trypanosoma Cruzi ...    27  1.3
pdb|1AOG|A  Chain A, Trypanosoma Cruzi Trypanothione Reducta...    27  1.3
pdb|1NDA|A  Chain A, Trypanothione Oxidoreductase (E.C.1.6.4...    27  1.8

>pdb|2ILA|   Interleukin-1Alpha (IL-1Alpha)
          Length = 155

 Score = 27.7 bits (60), Expect = 1.0
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 29  AKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSL--GWEINPTNYWFYS 76
           +K++ YV +Q +   +++K+  ++ +TI G+  +L   WE + T  +F S
Sbjct: 71  SKTQLYVTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTS 120



>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
           Reductase In Complex With Trypanothione, And The
           Structure- Based Discovery Of New Natural Product
           Inhibitors
 pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
           Reductase In Complex With Trypanothione, And The
           Structure- Based Discovery Of New Natural Product
           Inhibitors
          Length = 486

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 13/41 (31%), Positives = 23/41 (55%)

Query: 25  TIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGW 65
           T ++A+ +  +A + +    I K Y+++ R  EG  F LGW
Sbjct: 86  TTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGW 126



>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
 pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
          Length = 485

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 13/41 (31%), Positives = 23/41 (55%)

Query: 25  TIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGW 65
           T ++A+ +  +A + +    I K Y+++ R  EG  F LGW
Sbjct: 85  TTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGW 125



>pdb|1NDA|A Chain A, Trypanothione Oxidoreductase (E.C.1.6.4.8) (Oxidized)
 pdb|1NDA|B Chain B, Trypanothione Oxidoreductase (E.C.1.6.4.8) (Oxidized)
          Length = 491

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 13/41 (31%), Positives = 22/41 (52%)

Query: 25  TIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGW 65
           T ++A+ +  +A + +    I K Y ++ R  EG  F LGW
Sbjct: 86  TTLRAEWKKLIAVKDEAVLNINKSYEEMFRDTEGLEFFLGW 126



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,224,864
Number of Sequences: 13198
Number of extensions: 49764
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 4
length of query: 211
length of database: 2,899,336
effective HSP length: 84
effective length of query: 127
effective length of database: 1,790,704
effective search space: 227419408
effective search space used: 227419408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)