BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646135|ref|NP_208317.1| hypothetical protein
[Helicobacter pylori 26695]
(479 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 30 0.59
pdb|1E93|A Chain A, High Resolution Structure And Biochemic... 28 1.7
pdb|1M85|A Chain A, Structure Of Proteus Mirabilis Catalase... 27 5.0
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
Length = 1733
Score = 30.0 bits (66), Expect = 0.59
Identities = 31/137 (22%), Positives = 50/137 (35%), Gaps = 6/137 (4%)
Query: 93 PTIPRNTQIVFSSKELKESHPHQMPSLN--APMQKPQNKPHSSQQPSQNFSYPEPKLGSK 150
PT P + S S+ PS + +P P + +S PS +S P
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPT 1650
Query: 151 NSKNSLLQPLAIPSK--ISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNT 208
+ S P P+ SPT+ + +PT+ + P S N T P+
Sbjct: 1651 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710
Query: 209 SNADISENNESNENKDN 225
S + + + +E K N
Sbjct: 1711 SPGSPAYSPKQDEQKHN 1727
>pdb|1E93|A Chain A, High Resolution Structure And Biochemical Properties Of A
Recombinant Catalase Depleted In Iron
Length = 484
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 409 FVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVC 468
FV + H + I K++ + WVK H R ++G+ ++ E + S +
Sbjct: 190 FVHGFGSHTYSFINKDNERF--WVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEA 247
Query: 469 VKKGNY 474
+K+G+Y
Sbjct: 248 IKRGDY 253
>pdb|1M85|A Chain A, Structure Of Proteus Mirabilis Catalase For The Native
Form
pdb|1MQF|A Chain A, Compound I From Proteus Mirabilis Catalase
pdb|2CAF| Catalase Compound I
pdb|2CAG| Catalase Compound Ii
pdb|2CAH| Structure Of Proteus Mirabilis Pr Catalase For The Native Form
(E-Fe(Iii)) Complexed With Nadph
Length = 484
Score = 26.9 bits (58), Expect = 5.0
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 409 FVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVC 468
FV + H + I K++ + WVK H R ++G+ ++ E + S +
Sbjct: 190 FVHGFGSHTYSFINKDNERF--WVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEA 247
Query: 469 VKKGNY 474
+++G+Y
Sbjct: 248 IERGDY 253
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,777,789
Number of Sequences: 13198
Number of extensions: 114135
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 5
length of query: 479
length of database: 2,899,336
effective HSP length: 92
effective length of query: 387
effective length of database: 1,685,120
effective search space: 652141440
effective search space used: 652141440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)