BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646137|ref|NP_208319.1| chromosomal replication
initiator protein (dnaA) [Helicobacter pylori 26695]
(457 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 188 1e-48
pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of ... 32 0.15
pdb|1FDH|G Chain G, Hemoglobin (Deoxy, Human Fetal FII) 30 0.57
pdb|1QPW|B Chain B, Crystal Structure Determination Of Porc... 30 0.57
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Di... 30 0.74
pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer Fr... 30 0.74
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 29 0.97
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 29 0.97
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 28 1.6
pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectr... 28 1.6
pdb|1I3D|A Chain A, Human Carbonmonoxy Hemoglobin Bart's (G... 28 2.8
pdb|1SRP| Serratia Protease (E.C.3.4.24.40) (Serralysin) ... 26 8.2
pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehyd... 26 8.2
pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 26 8.2
pdb|1A9W|F Chain F, Human Embryonic Gower Ii Carbonmonoxy H... 26 8.2
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 26 8.2
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 188 bits (478), Expect = 1e-48
Identities = 111/323 (34%), Positives = 171/323 (52%), Gaps = 22/323 (6%)
Query: 107 KTSVKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNH 166
K + YT ENF+VG N YE+ K+ ++ YNP+ YG G GKTH+L A GN
Sbjct: 1 KDFLNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60
Query: 167 ALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEF 226
A ++ +V+ +++DF ++HL T++ F+ Y+ D LLDD QFL GK + + EF
Sbjct: 61 AKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSVDLLLLDDVQFLSGKERTQIEF 120
Query: 227 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 286
FH FN L+ KQI+L SDR P+ + G+ DRL SRFE GI ++ D +T+ I+K+K
Sbjct: 121 FHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI-ELDNKTRFKIIKEKL 179
Query: 287 QLNQITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNASIDLNLAKTVLEDLQ-KD 345
+ + L +EV++Y+ ++ + N+R++EG I I + E L+ K+
Sbjct: 180 KEFNLELRKEVIDYLLEN-TKNVREIEGKIKLIKLKG---------------FEGLERKE 223
Query: 346 HAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLSLAQFL 405
E L I+ VA +K +I R K + ARK+ Y R + +A+
Sbjct: 224 RKERDKLXQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAXYLCRKVCSASLIEIARAF 283
Query: 406 DLKDHSSISKMYSGVKKMLEEEK 428
KDH+++ V EEEK
Sbjct: 284 KRKDHTTVIHAIRSV----EEEK 302
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 32.0 bits (71), Expect = 0.15
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 206 DFFLLDDAQFLQGKPKLEEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWG 265
D F++ + +Q E+F T E + I+ I + K I R+ S +
Sbjct: 271 DMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY- 329
Query: 266 ITAKVMPPDLETKLSIVKQKCQLNQITLPEEVMEYIAQHISDNIRQMEGA 315
+ V +L TK VKQ + +L EE+ QH ++ +R+ A
Sbjct: 330 --STVTMDELRTKWDKVKQLVPIRDQSLQEELAR---QHANERLRRQFAA 374
>pdb|1FDH|G Chain G, Hemoglobin (Deoxy, Human Fetal FII)
Length = 147
Score = 30.0 bits (66), Expect = 0.57
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 163 IGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKL 222
+GN ++ H K VL + L D +KHLD+ + HCD +D F KL
Sbjct: 56 MGNPKVKAHGKKVLTS----LGDAIKHLDDLKGTFAQLSELHCDKLHVDPENF-----KL 106
Query: 223 EEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRF 262
T +H + + K + G+ L SR+
Sbjct: 107 LGNVLVTVLAIHFGKEFTPEVQASWQKMVTGVASALSSRY 146
>pdb|1QPW|B Chain B, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|1QPW|D Chain D, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|2PGH|B Chain B, Hemoglobin (Aquomet)
pdb|2PGH|D Chain D, Hemoglobin (Aquomet)
Length = 146
Score = 30.0 bits (66), Expect = 0.57
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 163 IGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQF 215
+GN ++ H K VL + +D LKHLDN K HCD +D F
Sbjct: 55 MGNPKVKAHGKKVLQS----FSDGLKHLDNLKGTFAKLSELHCDQLHVDPENF 103
>pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 29.6 bits (65), Expect = 0.74
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 123 SCNNTVYEIAKKVAQSDTPPYNPVLF-YGGTGLGKTHILNAI 163
S + ++E+ + QS YN +F YG TG GKT+ ++ +
Sbjct: 112 SSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 153
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 29.6 bits (65), Expect = 0.74
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 123 SCNNTVYEIAKKVAQSDTPPYNPVLF-YGGTGLGKTHILNAI 163
S + ++E+ + QS YN +F YG TG GKT+ ++ +
Sbjct: 126 SSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 167
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 29.3 bits (64), Expect = 0.97
Identities = 19/67 (28%), Positives = 29/67 (42%), Gaps = 3/67 (4%)
Query: 146 VLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHC 205
VL G G+GKTH+ A+ A E + + DF+ F+ + D F+ RH
Sbjct: 76 VLLVGPPGVGKTHLARAV---AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132
Query: 206 DFFLLDD 212
+ D
Sbjct: 133 PCIVFID 139
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 29.3 bits (64), Expect = 0.97
Identities = 19/67 (28%), Positives = 29/67 (42%), Gaps = 3/67 (4%)
Query: 146 VLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHC 205
VL G G+GKTH+ A+ A E + + DF+ F+ + D F+ RH
Sbjct: 52 VLLVGPPGVGKTHLARAV---AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 108
Query: 206 DFFLLDD 212
+ D
Sbjct: 109 PCIVFID 115
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 141 PPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSE 180
PPY + F G G+GKT I A E+ K+V+LV+++
Sbjct: 8 PPY--LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats
From Alpha-Actinin
Length = 250
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 206 DFFLLDDAQFLQGKPKLEEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWG 265
D F++ + +Q E+F T E + I+ I + K I R+ S +
Sbjct: 154 DMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY- 212
Query: 266 ITAKVMPPDLETKLSIVKQKCQLNQITLPEEV 297
+ V +L TK VKQ + +L EE+
Sbjct: 213 --STVTMDELRTKWDKVKQLVPIRDQSLQEEL 242
>pdb|1I3D|A Chain A, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3D|B Chain B, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3E|A Chain A, Human Azido-Met Hemoglobin Bart's (Gamma4)
pdb|1I3E|B Chain B, Human Azido-Met Hemoglobin Bart's (Gamma4)
Length = 146
Score = 27.7 bits (60), Expect = 2.8
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 163 IGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKL 222
+GN ++ H K VL + L D +KHLD+ + HCD +D F KL
Sbjct: 55 MGNPKVKAHGKKVLTS----LGDAIKHLDDLKGTFAQLSELHCDKLHVDPENF-----KL 105
Query: 223 EEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRF 262
T +H + + K + + L SR+
Sbjct: 106 LGNVLVTVLAIHFGKEFTPEVQASWQKMVTAVASALSSRY 145
>pdb|1SRP| Serratia Protease (E.C.3.4.24.40) (Serralysin) Complexed With Zinc
Length = 471
Score = 26.2 bits (56), Expect = 8.2
Identities = 32/126 (25%), Positives = 52/126 (40%), Gaps = 21/126 (16%)
Query: 92 KIQINAQSNINYKAIK--TSVKDSYTFENFVVGSCNNTVY-EIAKKVAQSDTPPYNPVLF 148
+I +N +S + +K S+ T EN + GS N+ + A V + N VLF
Sbjct: 302 RINLNEKSFSDVGGLKGNVSIAAGVTIENAIGGSGNDVIVGNAANNVLKGGAG--NDVLF 359
Query: 149 YGGT------GLGKT-HILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAK 201
GG G GK + +A + A + D++ DF K +D + F +
Sbjct: 360 GGGGADELWGGAGKDIFVFSAASDSA---------PGASDWIRDFQKGIDKIDLSFFNKE 410
Query: 202 YRHCDF 207
+ DF
Sbjct: 411 AQSSDF 416
>pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|P Chain P, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|Q Chain Q, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|R Chain R, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|O Chain O, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|P Chain P, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|Q Chain Q, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|R Chain R, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 334
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 221 KLEEEFFHTFNELHANSKQIVLISDRSPKNIA 252
+L+ E N L N K+I++ ++R P+N+A
Sbjct: 52 RLDAEVSVNGNNLVVNGKEIIVKAERDPENLA 83
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 221 KLEEEFFHTFNELHANSKQIVLISDRSPKNIA 252
+L+ E N L N K+I++ ++R P+N+A
Sbjct: 52 RLDAEVSVNGNNLVVNGKEIIVKAERDPENLA 83
>pdb|1A9W|F Chain F, Human Embryonic Gower Ii Carbonmonoxy Hemoglobin
pdb|1A9W|E Chain E, Human Embryonic Gower Ii Carbonmonoxy Hemoglobin
Length = 146
Score = 26.2 bits (56), Expect = 8.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 163 IGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQF 215
+GN ++ H K VL + D +K++DN K HCD +D F
Sbjct: 55 LGNPKVKAHGKKVLTS----FGDAIKNMDNLKPAFAKLSELHCDKLHVDPENF 103
>pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
Length = 334
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 221 KLEEEFFHTFNELHANSKQIVLISDRSPKNIA 252
+L+ E N L N K+I++ ++R P+N+A
Sbjct: 52 RLDAEVSVNGNNLVVNGKEIIVKAERDPENLA 83
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,407,618
Number of Sequences: 13198
Number of extensions: 95808
Number of successful extensions: 337
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 18
length of query: 457
length of database: 2,899,336
effective HSP length: 91
effective length of query: 366
effective length of database: 1,698,318
effective search space: 621584388
effective search space used: 621584388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)