BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646138|ref|NP_208320.1| purine nucleoside
phosphorylase (punB) [Helicobacter pylori 26695]
(180 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 30 0.21
pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogen... 26 2.3
pdb|1QQS|A Chain A, Neutrophil Gelatinase Associated Lipoca... 26 3.1
pdb|1EIO|A Chain A, Ileal Lipid Binding Protein In Complex ... 25 4.0
pdb|2SCU|A Chain A, A Detailed Description Of The Structure... 25 4.0
pdb|1SCU|A Chain A, Succinyl-Coa Synthetase (Succinate-Coa ... 25 4.0
pdb|1DFV|B Chain B, Crystal Structure Of Human Neutrophil G... 25 4.0
pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain ... 25 4.0
pdb|1EAL| Nmr Study Of Ileal Lipid Binding Protein 25 4.0
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E... 25 4.0
pdb|1NGL|A Chain A, Human Neutrophil Gelatinase-Associated ... 25 4.0
pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhy... 25 6.8
pdb|1MAH|A Chain A, Fasciculin2 - Mouse Acetylcholinesteras... 24 8.9
pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholines... 24 8.9
pdb|2SFA| Serine Proteinase From Streptomyces Fradiae Atc... 24 8.9
pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholines... 24 8.9
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Do... 24 8.9
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.6 bits (65), Expect = 0.21
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 19/63 (30%)
Query: 35 NPDTESLIFIGSAGSYSPEMELLSVFESVCGYQIE---------ESFSHLNSYTPLDNFI 85
NPDT+S+ PE ELL V + E E+F +LN Y + NFI
Sbjct: 663 NPDTDSI----------PESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFI 712
Query: 86 HIE 88
++E
Sbjct: 713 NVE 715
>pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 264
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 131 VLSVAKAFSLKAKGIFCVSNYVGLNAYQEFKENHAKVKQILE 172
++ K + KAKGI C+ Q+ K N ++ K + E
Sbjct: 94 MIETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSE 135
>pdb|1QQS|A Chain A, Neutrophil Gelatinase Associated Lipocalin Homodimer
Length = 174
Score = 25.8 bits (55), Expect = 3.1
Identities = 20/79 (25%), Positives = 35/79 (43%), Gaps = 9/79 (11%)
Query: 98 VRVNSSNYIHTSEMFAKKMVQKGVLLENMEFFSVLSVAKAFSLKAKGIFCVSNYVGLNAY 157
VRV S+NY + +F KK+ Q N E+F + + L ++ +N++ +
Sbjct: 105 VRVVSTNYNQHAMVFFKKVSQ------NREYFKITLYGRTKELTSE---LKNNFIRFSKS 155
Query: 158 QEFKENHAKVKQILENIID 176
ENH ++ ID
Sbjct: 156 LGLPENHIVFPVPIDQCID 174
>pdb|1EIO|A Chain A, Ileal Lipid Binding Protein In Complex With Glycocholate
Length = 127
Score = 25.4 bits (54), Expect = 4.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 97 RVRVNSSNYIHTSEMFAKKMVQ 118
+V VNS NY HT+E+ K+V+
Sbjct: 89 KVVVNSPNYHHTAEIVDGKLVE 110
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
Length = 288
Score = 25.4 bits (54), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 26 INLTRMCLKNPDTESLIFIGSAGSYSPEMELLSVFESV 63
I++ M K+P TE+++ IG G + E + E V
Sbjct: 188 IDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHV 225
>pdb|1SCU|A Chain A, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1SCU|D Chain D, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 25.4 bits (54), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 26 INLTRMCLKNPDTESLIFIGSAGSYSPEMELLSVFESV 63
I++ M K+P TE+++ IG G + E + E V
Sbjct: 188 IDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHV 225
>pdb|1DFV|B Chain B, Crystal Structure Of Human Neutrophil Gelatinase
Associated Lipocalin Monomer
pdb|1DFV|A Chain A, Crystal Structure Of Human Neutrophil Gelatinase
Associated Lipocalin Monomer
Length = 177
Score = 25.4 bits (54), Expect = 4.0
Identities = 20/79 (25%), Positives = 34/79 (42%), Gaps = 9/79 (11%)
Query: 98 VRVNSSNYIHTSEMFAKKMVQKGVLLENMEFFSVLSVAKAFSLKAKGIFCVSNYVGLNAY 157
VRV S+NY + +F KK+ Q N E+F + + L ++ N++ +
Sbjct: 108 VRVVSTNYNQHAMVFFKKVSQ------NREYFKITLYGRTKELTSE---LKENFIRFSKS 158
Query: 158 QEFKENHAKVKQILENIID 176
ENH ++ ID
Sbjct: 159 LGLPENHIVFPVPIDQCID 177
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
Length = 302
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 63 VCGYQIEESFSHLNSYTPLDNFIHIETEEQALFERVRVNSSNYIHTSEMFAKKMVQKGVL 122
+ G +E +++ T N H A+F RV ++ +IH +FA K + KG
Sbjct: 205 LAGQPLEVDGEYMSGPTRFIN--HSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTE 262
Query: 123 L 123
L
Sbjct: 263 L 263
>pdb|1EAL| Nmr Study Of Ileal Lipid Binding Protein
Length = 127
Score = 25.4 bits (54), Expect = 4.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 97 RVRVNSSNYIHTSEMFAKKMVQ 118
+V VNS NY HT+E+ K+V+
Sbjct: 89 KVVVNSPNYHHTAEIVDGKLVE 110
>pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
Length = 286
Score = 25.4 bits (54), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 26 INLTRMCLKNPDTESLIFIGSAGSYSPEMELLSVFESV 63
I++ M K+P TE+++ IG G + E + E V
Sbjct: 188 IDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHV 225
>pdb|1NGL|A Chain A, Human Neutrophil Gelatinase-Associated Lipocalin (Hngal),
Regularised Average Nmr Structure
Length = 179
Score = 25.4 bits (54), Expect = 4.0
Identities = 20/79 (25%), Positives = 34/79 (42%), Gaps = 9/79 (11%)
Query: 98 VRVNSSNYIHTSEMFAKKMVQKGVLLENMEFFSVLSVAKAFSLKAKGIFCVSNYVGLNAY 157
VRV S+NY + +F KK+ Q N E+F + + L ++ N++ +
Sbjct: 109 VRVVSTNYNQHAMVFFKKVSQ------NREYFKITLYGRTKELTSE---LKENFIRFSKS 159
Query: 158 QEFKENHAKVKQILENIID 176
ENH ++ ID
Sbjct: 160 LGLPENHIVFPVPIDQCID 178
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 24.6 bits (52), Expect = 6.8
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 83 NFIHIETEEQALF----ERVRVNSSNYIHTSEMFAKKMVQKGVLLENMEFFSVLSVAKAF 138
N H +T E RV N + E+F + + + +M F SVL A +
Sbjct: 314 NLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMSFLSVLQYAVQY 373
Query: 139 SLKAKGIFCVSNY 151
LK K + +Y
Sbjct: 374 -LKVKRVVVCGHY 385
>pdb|1MAH|A Chain A, Fasciculin2 - Mouse Acetylcholinesterase Complex
Length = 543
Score = 24.3 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Query: 65 GYQIEESFSHLNSYTPLDNFIHIETEEQALFERVRVNSSNYIHTSE 110
GY+IE F PLD ++ TEE+ +R+ +N+ T +
Sbjct: 448 GYEIEFIFG-----LPLDPSLNYTTEERIFAQRLMKYWTNFARTGD 488
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 24.3 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Query: 65 GYQIEESFSHLNSYTPLDNFIHIETEEQALFERVRVNSSNYIHTSE 110
GY+IE F PLD ++ TEE+ +R+ +N+ T +
Sbjct: 444 GYEIEFIFG-----LPLDPSLNYTTEERIFAQRLMKYWTNFARTGD 484
>pdb|2SFA| Serine Proteinase From Streptomyces Fradiae Atcc 14544
Length = 191
Score = 24.3 bits (51), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 3 LCAGRNETLKKAVPIGVGLIESAINLTRMCLKNPDTESLIFIGS 46
L +GR L V G G I S + T +C + D+ +F GS
Sbjct: 112 LHSGRVTGLNATVNYGGGDIVSGLIQTNVCAEPGDSGGALFAGS 155
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 24.3 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Query: 65 GYQIEESFSHLNSYTPLDNFIHIETEEQALFERVRVNSSNYIHTSE 110
GY+IE F PLD ++ TEE+ +R+ +N+ T +
Sbjct: 445 GYEIEFIFG-----LPLDPSLNYTTEERIFAQRLMKYWTNFARTGD 485
>pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
Length = 547
Score = 24.3 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Query: 65 GYQIEESFSHLNSYTPLDNFIHIETEEQALFERVRVNSSNYIHTSE 110
GY+IE F PLD ++ TEE+ +R+ +N+ T +
Sbjct: 448 GYEIEFIFG-----LPLDPSLNYTTEERIFAQRLMKYWTNFARTGD 488
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 897,132
Number of Sequences: 13198
Number of extensions: 32088
Number of successful extensions: 122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 17
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)