BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646139|ref|NP_208321.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L8W|A Chain A, Crystal Structure Of Lyme Disease Varia... 23 4.4
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 23 5.8
pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of ... 23 5.8
pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion... 23 5.8
pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), ... 23 7.6
pdb|1JQL|B Chain B, Mechanism Of Processivity Clamp Opening... 22 9.9
pdb|1JR3|D Chain D, Crystal Structure Of The Processivity C... 22 9.9
pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campyloba... 22 9.9
>pdb|1L8W|A Chain A, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
pdb|1L8W|B Chain B, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
pdb|1L8W|C Chain C, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
pdb|1L8W|D Chain D, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
Length = 348
Score = 23.5 bits (49), Expect = 4.4
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 9 LADIEDSQNEI-EMLLKLAN------LSLGDFIEIKRGSMDMPKGVN-EAFFTQLSEEVE 60
+AD +D N+ + +++L N S G + G PK + + +FT ++ ++E
Sbjct: 15 VADKDDPTNKFYQSVIQLGNGFLDVFTSFGGLVAEAFGFKSDPKKSDVKTYFTTVAAKLE 74
Query: 61 RLKELINALNKIKKGL 76
+ K +N+L K K +
Sbjct: 75 KTKTDLNSLPKEKSDI 90
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 23.1 bits (48), Expect = 5.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 3 EKIRKILADIEDSQNEIEMLLKLA 26
E+ +K+L ++ + E+E LLKL+
Sbjct: 719 ERYQKLLKQKQEKETELENLLKLS 742
>pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of Focal Adhesion
Kinase
Length = 126
Score = 23.1 bits (48), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 5 IRKILADIEDS--------QNEIEMLLKLANLSLGDFI 34
+R +LA ++++ EIEM KL N LG+ I
Sbjct: 41 LRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELI 78
>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
Length = 162
Score = 23.1 bits (48), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 5 IRKILADIEDS--------QNEIEMLLKLANLSLGDFI 34
+R +LA ++++ EIEM KL N LG+ I
Sbjct: 71 LRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELI 108
>pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), VP2, PH7.5, T4
Degrees C
Length = 587
Score = 22.7 bits (47), Expect = 7.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 36 IKRGSMDMPKGVNEAFFT 53
I+ M PKG+N FFT
Sbjct: 232 IEHNVMGTPKGMNSQFFT 249
>pdb|1JQL|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
Length = 140
Score = 22.3 bits (46), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (47%)
Query: 20 EMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLS 56
E LL L L D + I RG+ N A+FT L+
Sbjct: 95 EQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA 131
>pdb|1JR3|D Chain D, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JQJ|C Chain C, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
pdb|1JQJ|D Chain D, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
Length = 343
Score = 22.3 bits (46), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (47%)
Query: 20 EMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLS 56
E LL L L D + I RG+ N A+FT L+
Sbjct: 95 EQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA 131
>pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campylobacter Jejuni
Ferritin
Length = 167
Score = 22.3 bits (46), Expect = 9.9
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 18 EIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNK 71
+I + ANL L S+D G F SEE + K+LI LN+
Sbjct: 13 QINKEMYAANLYLSMSSWCYENSLD---GAGAFLFAHASEESDHAKKLITYLNE 63
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.140 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,365
Number of Sequences: 13198
Number of extensions: 11907
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 8
length of query: 79
length of database: 2,899,336
effective HSP length: 55
effective length of query: 24
effective length of database: 2,173,446
effective search space: 52162704
effective search space used: 52162704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)