BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646140|ref|NP_208322.1| glucosamine
fructose-6-phosphate aminotransferase (isomerizing) (glmS)
[Helicobacter pylori 26695]
(597 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With G... 415 e-117
pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-Phosp... 239 8e-64
pdb|1GDO|B Chain B, Glutaminase Domain Of Glucosamine 6-Pho... 187 2e-48
pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothet... 95 3e-20
pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (... 92 1e-19
pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (... 92 1e-19
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribos... 69 1e-12
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd (Dic... 28 2.9
pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfat... 28 2.9
pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9o... 27 4.9
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 8.4
pdb|1E9I|D Chain D, Enolase From E.Coli >gi|16975437|pdb|1E... 27 8.4
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
Length = 608
Score = 415 bits (1067), Expect = e-117
Identities = 253/614 (41%), Positives = 362/614 (58%), Gaps = 24/614 (3%)
Query: 2 CGIVGYIGDSEKKSVLLEGLKELEYRGYDSAGLAVLSND-RLEVFKTQGKLENLKLELKN 60
CGIVG I + +LLEGL+ LEYRGYDSAGLAV+ + + + GK++ L +
Sbjct: 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLA-QAAE 59
Query: 61 KEFLDFGVSIAHTRWATHGKPSSANAHPHFTENLALVHNGIIENYASLKKELENKGHAFL 120
+ L G IAHTRWATHG+PS NAHPH +E++ +VHNGIIEN+ L++EL+ +G+ F+
Sbjct: 60 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV 119
Query: 121 SQTDTEVIAHLLEETLKSESDLLKAFEKSISLLKGSYAILMLHKRAKESLFYAKSSSPLV 180
S+TDTEVIAHL+ LK L +A ++I L+G+Y +++ R ++L A+S SPLV
Sbjct: 120 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV 179
Query: 181 VGKGKEGVFFASSLSVLAPKVDQFVILEENSVGRISLE--NFKDLNNIENMKDYAFEDKD 238
+G G F AS L P +F+ LEE + I+ N D E + +
Sbjct: 180 IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ 239
Query: 239 Y---SKGNFRNYLEKEIYEQHSSLLECLEGRLEALSV-YCEIDP---EFLKNVSEITLCS 291
Y KG +R+Y++KEIYEQ +++ L GR+ V E+ P E L V I + +
Sbjct: 240 YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA 299
Query: 292 CGSSYHASLASVYLFERLAKIRARAILASEYRYAHFKSNPNELFIAISQSGETADTLEAL 351
CG+SY++ + S Y FE LA I +ASE+RY N L I +SQSGETADTL L
Sbjct: 300 CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL 359
Query: 352 KLAKAQG-LKTISLCNAPFSMMSRISDHTLLIRAGVERSVASTKAFSSQVMLLWLLSVYL 410
+L+K G L ++++CN P S + R SD L+ AG E VASTKAF++Q+ +L +L L
Sbjct: 360 RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL 419
Query: 411 GKQLG-TISKEEERIQAKNMLNSVNAMKVEPKLHE--KIKRLSKRYLHGHGFFYIGRDVF 467
K G S E + + L S ++E L + +I+ L++ + H ++GR
Sbjct: 420 SKLKGLDASIEHDIVHGLQALPS----RIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQ 475
Query: 468 YPLALEGALKLKEISYLHAEGYASAEMKHGPIALVDSNLFTIALLSKHLLFDKTKSNIEE 527
YP+ALEGALKLKEISY+HAE YA+ E+KHGP+AL+D+++ I + + L +K KSNIEE
Sbjct: 476 YPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEE 535
Query: 528 LSARDSTICVLSSEILEIADD----FIQLEESESYMEEFFRMNLAVQLLALEIAMRLNHD 583
+ AR + V + + I++ E + F + +QLLA +A+ D
Sbjct: 536 VRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIF-YTVPLQLLAYHVALIKGTD 594
Query: 584 VDHPRNLAKSVTVE 597
VD PRNLAKSVTVE
Sbjct: 595 VDQPRNLAKSVTVE 608
>pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With 2-Amino-2-Deoxyglucitol 6-Phosphate
pdb|1MOQ| Isomerase Domain Of Glucosamine 6-Phosphate Synthase Complexed
With Glucosamine 6-Phosphate
pdb|1MOR| Isomerase Domain Of Glucosamine 6-Phosphate Synthase Complexed
With Glucose 6-Phosphate
Length = 368
Score = 239 bits (609), Expect = 8e-64
Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 17/369 (4%)
Query: 241 KGNFRNYLEKEIYEQHSSLLECLEGRLEALSV-YCEIDP---EFLKNVSEITLCSCGSSY 296
KG +R+Y++KEIYEQ +++ L GR+ V E+ P E L V I + +CG+SY
Sbjct: 5 KGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSY 64
Query: 297 HASLASVYLFERLAKIRARAILASEYRYAHFKSNPNELFIAISQSGETADTLEALKLAKA 356
++ + S Y FE LA I +ASE+RY N L I +SQSGETADTL L+L+K
Sbjct: 65 NSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKE 124
Query: 357 QG-LKTISLCNAPFSMMSRISDHTLLIRAGVERSVASTKAFSSQVMLLWLLSVYLGKQLG 415
G L ++++CN P S + R SD L+ AG E VASTKAF++Q+ +L +L L + G
Sbjct: 125 LGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKG 184
Query: 416 T-ISKEEERIQAKNMLNSVNAMKVEPKLHE--KIKRLSKRYLHGHGFFYIGRDVFYPLAL 472
S E + + L S ++E L + +I+ L++ + H ++GR YP+AL
Sbjct: 185 LDASIEHDIVHGLQALPS----RIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIAL 240
Query: 473 EGALKLKEISYLHAEGYASAEMKHGPIALVDSNLFTIALLSKHLLFDKTKSNIEELSARD 532
EGALKLKEISY+HAE YA+ E+KHGP+AL+D+++ I + + L +K KSNIEE+ AR
Sbjct: 241 EGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARG 300
Query: 533 STICVLSSEILEIADD----FIQLEESESYMEEFFRMNLAVQLLALEIAMRLNHDVDHPR 588
+ V + + I++ E + F + +QLLA +A+ DVD PR
Sbjct: 301 GQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIF-YTVPLQLLAYHVALIKGTDVDQPR 359
Query: 589 NLAKSVTVE 597
NLAKSVTVE
Sbjct: 360 NLAKSVTVE 368
>pdb|1GDO|B Chain B, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1GDO|D Chain D, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1GMS|C Chain C, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With L-Glu Hydroxamate
pdb|1GMS|G Chain G, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With L-Glu Hydroxamate
pdb|1GDO|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1GDO|C Chain C, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1GMS|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With L-Glu Hydroxamate
pdb|1GMS|E Chain E, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With L-Glu Hydroxamate
Length = 240
Score = 187 bits (476), Expect = 2e-48
Identities = 98/216 (45%), Positives = 139/216 (63%), Gaps = 2/216 (0%)
Query: 2 CGIVGYIGDSEKKSVLLEGLKELEYRGYDSAGLAVLSND-RLEVFKTQGKLENLKLELKN 60
CGIVG I + +LLEGL+ LEYRGYDSAGLAV+ + + + GK++ L +
Sbjct: 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLA-QAAE 59
Query: 61 KEFLDFGVSIAHTRWATHGKPSSANAHPHFTENLALVHNGIIENYASLKKELENKGHAFL 120
+ L G IAHTRWATHG+PS NAHPH +E++ +VHNGIIEN+ L++EL+ +G+ F+
Sbjct: 60 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV 119
Query: 121 SQTDTEVIAHLLEETLKSESDLLKAFEKSISLLKGSYAILMLHKRAKESLFYAKSSSPLV 180
S+TDTEVIAHL+ LK L +A ++I L+G+Y +++ R ++L A+S SPLV
Sbjct: 120 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV 179
Query: 181 VGKGKEGVFFASSLSVLAPKVDQFVILEENSVGRIS 216
+G G F AS L P +F+ LEE + I+
Sbjct: 180 IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEIT 215
>pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0813) From Thermotoga Maritima At 1.8 A Resolution
Length = 342
Score = 94.7 bits (234), Expect = 3e-20
Identities = 97/353 (27%), Positives = 158/353 (44%), Gaps = 34/353 (9%)
Query: 250 KEIYEQHSSLLECLEG---RLEALSVYCEIDPEFLKNVS-EITLCSCGSSYHASLASVYL 305
KEI +Q + L + E LE ++ EI KN++ E+ CGSSY+ +L Y
Sbjct: 18 KEITDQKNELKKFFENFVLNLEKTEIFSEIQ----KNLTDEVLFVGCGSSYNLALTISYY 73
Query: 306 FERLAKIRARAILASEYRYAHFKS-NPNELFIAISQSGETADTLEALKLAKAQGLKTISL 364
FER+ KIR +AI A E + L S++G T + L A + K + +TI +
Sbjct: 74 FERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGI 133
Query: 365 CNAPFSMMSRISDHTLLIRAGVERSVASTKAFSSQVMLLWLLSVYLGKQLGTISKEEERI 424
S +++ SD L+ E ++ TK+FS ++ L L+ K G ++ +
Sbjct: 134 TIEEESRLAKESDLPLVFPVR-EEAIVXTKSFSXILLSLXFLA---DKIAGNSTERFSEL 189
Query: 425 QAKNMLNSVNAMKVEPKLHEKIKRLSKRYLHGHGFFYIGRDVFYPLALEGALKLKEISYL 484
S + K+ EKI H H F ++G F+ ++LE ALK E S
Sbjct: 190 VGY----SPEFFDISWKVIEKIDLKE----HDH-FVFLGXSEFFGVSLESALKCIEXSLT 240
Query: 485 HAEGYASAEMKHGPIALVDSNLFTIALLSKHLLFDKTKSNIEELSAR-DSTICVLSSEIL 543
+E Y++ E +HGP ALV L+F + S +E R + L + +L
Sbjct: 241 FSEAYSTLEYRHGPKALVKKGT---------LVFXQKVSGXDEQEKRLRKELESLGATVL 291
Query: 544 EIADDFIQLEESESYMEEFFRMNLAVQLLALEIAMRLNHDVDHPRNLAKSVTV 596
E+ + + S + F R + Q+L + A+ D P +L K+V +
Sbjct: 292 EVGEGG-DIPVSNDWKSAFLR-TVPAQILGYQKAISRGISPDKPPHLEKTVVL 342
>pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|2 Chain 2, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|3 Chain 3, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|4 Chain 4, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
Length = 465
Score = 92.4 bits (228), Expect = 1e-19
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 8/196 (4%)
Query: 2 CGIVGYIGDSEKKSVLLEGLKELEYRGYDSAGLAVLSNDRLEVFKTQGKLENLKLELKNK 61
CG+ G G E + GL L++RG + AG+ ++L K QG + + +
Sbjct: 1 CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELS 60
Query: 62 EFLDFGVSIAHTRWATHGKPSSANAHPHFTEN-----LALVHNGIIENYASLKKELENKG 116
+ G +I H R+AT G N P + LAL HNG + N LK++LEN+G
Sbjct: 61 KVKGKG-AIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQG 119
Query: 117 HAFLSQTDTEVIAHLLEETLKSESDLLKAFEKSISLLKGSYAILMLHKRAKESLFYAKSS 176
F + +DTEV+AHL++ + L + S+S+LKG+YA L++ +
Sbjct: 120 SIFQTSSDTEVLAHLIKRS--GHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGL 177
Query: 177 SPLVVGKGKEGVFFAS 192
PL +G + AS
Sbjct: 178 RPLSIGMMGDAYVVAS 193
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 92.4 bits (228), Expect = 1e-19
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 8/196 (4%)
Query: 2 CGIVGYIGDSEKKSVLLEGLKELEYRGYDSAGLAVLSNDRLEVFKTQGKLENLKLELKNK 61
CG+ G G E + GL L++RG + AG+ ++L K QG + + +
Sbjct: 1 CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELS 60
Query: 62 EFLDFGVSIAHTRWATHGKPSSANAHPHFTEN-----LALVHNGIIENYASLKKELENKG 116
+ G +I H R+AT G N P + LAL HNG + N LK++LEN+G
Sbjct: 61 KVKGKG-AIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQG 119
Query: 117 HAFLSQTDTEVIAHLLEETLKSESDLLKAFEKSISLLKGSYAILMLHKRAKESLFYAKSS 176
F + +DTEV+AHL++ + L + S+S+LKG+YA L++ +
Sbjct: 120 SIFQTSSDTEVLAHLIKRS--GHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGL 177
Query: 177 SPLVVGKGKEGVFFAS 192
PL +G + AS
Sbjct: 178 RPLSIGMMGDAYVVAS 193
>pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo-Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo-Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
Length = 504
Score = 68.9 bits (167), Expect = 1e-12
Identities = 52/195 (26%), Positives = 96/195 (48%), Gaps = 14/195 (7%)
Query: 2 CGIVGYIGDSEKKSVLLEGLKELEYRGYDSAGLAVL-SNDRLEVFKTQGKLENLKLELKN 60
CGIVG G + + L L++RG D+AG+ + +N+ + K G + ++ E ++
Sbjct: 1 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDV-FEARH 59
Query: 61 KEFLDFGVSIAHTRWATHGKPSSANAHPHFTEN---LALVHNGIIENYASLKKEL-ENKG 116
+ L + I H R+ T G S++ A P + + + L HNG + N L+K+L E K
Sbjct: 60 MQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKR 119
Query: 117 HAFLSQTDTEVIAHLLEETLKS------ESD-LLKAFEKSISLLKGSYA-ILMLHKRAKE 168
+ +D+E++ ++ L + E+D + A + L++G+YA + M+
Sbjct: 120 RHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMV 179
Query: 169 SLFYAKSSSPLVVGK 183
+ PLV+GK
Sbjct: 180 AFRDPNGIRPLVLGK 194
>pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 272
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 232 YAFEDKDYSKGNFRNYLEKEIYEQHSSLLECLEGRLEALSVYCEIDPEFLKNVSEITLCS 291
Y F++ FR+ + + E+ L+ + E++S+Y +ID + L+N E +L +
Sbjct: 153 YEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSA-ESMSIYDDIDADVLRNYQEYSLAN 211
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-
3,6-Anhydro-D-Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-
3,6-Anhydro-D-Galactose-2-Sulfate 4 Galactohydrolase
Length = 464
Score = 28.1 bits (61), Expect = 2.9
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
Query: 237 KDYSKGNFRNYLEKEIYEQHSSLLECLEGRLEALSVYCEIDPEFLKN----VSEITLCSC 292
K+Y +G RN I C +G + P F+KN V+ ++ SC
Sbjct: 225 KNYKQGGIRNIFADNI--------RCSKGLAAVM-----FGPHFMKNGDVQVTNVSSVSC 271
Query: 293 GSSYHASLASVYLFERLAKIRAR 315
GS+ + V LF ++ R
Sbjct: 272 GSAVRSDSGFVELFSPTDEVHTR 294
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 27.3 bits (59), Expect = 4.9
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 18 LEGLKELEYRGYDSAGLAVLSNDRLEVFKTQGKLENLKLELKNKEFLDFGVSIAHTRWAT 77
L GL ELEY G+ G V + + V +GK+ LE+ ++ W+
Sbjct: 571 LPGLLELEYEGFYVRGFFV-TKKKYAVIDEEGKITTRGLEIVRRD------------WSE 617
Query: 78 HGKPSSANAHPHFTENLALVHNGIIENYASLKKELENK 115
K + A A++ +G +E + KE+ K
Sbjct: 618 IAKETQARVLE------AILKHGDVEEAVRIVKEVTEK 649
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.6 bits (57), Expect = 8.4
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 81 PSSANAHPHFTENLALVHN---------GIIENYASLKKELENKGHAFLSQTDTEV---I 128
P+ A + H E VH+ I+ + S EL N F+ + V
Sbjct: 637 PNIAEQYTHQDEIYEQVHSKGLYVPESRSILLHGPSKGVELRNDSEGFIHEFGHAVDDYA 696
Query: 129 AHLLEETLKSESDLLKAFEKSISLLKGSYAILMLHKRAKESLFYAKS 175
+LL+ K++SDL+ +K I + K + L + R E+ F+A++
Sbjct: 697 GYLLD---KNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEA 740
>pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
Length = 431
Score = 26.6 bits (57), Expect = 8.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 328 KSNPNELFIAISQSGETADTLEALKLAKAQGLKTI 362
K N + I +Q G +TL A+K+AK G +
Sbjct: 332 KGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAV 366
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.133 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,055,505
Number of Sequences: 13198
Number of extensions: 119690
Number of successful extensions: 317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 12
length of query: 597
length of database: 2,899,336
effective HSP length: 94
effective length of query: 503
effective length of database: 1,658,724
effective search space: 834338172
effective search space used: 834338172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)