BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646141|ref|NP_208323.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(231 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KQ4|C Chain C, Crystal Structure Of Thy1-Complementing... 61 1e-10
pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1S... 27 2.0
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 26 4.5
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 26 4.5
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 26 4.5
pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Nove... 25 5.8
pdb|1PHP| 3-Phosphoglycerate Kinase (Pgk) (E.C.2.7.2.3) 25 5.8
pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli >g... 25 7.6
pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRE... 25 7.6
pdb|1BUO|A Chain A, Btb Domain From Plzf 25 7.6
>pdb|1KQ4|C Chain C, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
pdb|1KQ4|B Chain B, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
pdb|1KQ4|D Chain D, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
pdb|1KQ4|A Chain A, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
Length = 232
Score = 61.2 bits (147), Expect = 1e-10
Identities = 55/195 (28%), Positives = 92/195 (46%), Gaps = 12/195 (6%)
Query: 40 AIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHR 99
A+R SF+ +D+ LI + H + EH+ + F +K A Q RHR
Sbjct: 35 AVRAARVSFDXGLKDEERDRHLIEYLXK-HGHETPFEHIVFTFHVKAPIFVARQWF-RHR 92
Query: 100 IASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNA-MSVLALENLRIL 158
IAS + S RY+ E ++P + ER + + + E+V +S + + R
Sbjct: 93 IASYNELSGRYSKLSY---EFYIP----SPERLEGYKTTIPPERVTEKISEIVDKAYRTY 145
Query: 159 LS--EHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDA 216
L E + ++A+ +P + T +++NARSL NFL LR+ + A E+Q A A+
Sbjct: 146 LELIESGVPREVARIVLPLNLYTRFFWTVNARSLXNFLNLRADSHAQWEIQQYALAIARI 205
Query: 217 LPGEHQYLFEDCLKH 231
+ + FE LK+
Sbjct: 206 FKEKCPWTFEAFLKY 220
>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 594
Score = 26.9 bits (58), Expect = 2.0
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Query: 195 TLRSSNKALKEMQDLAKALFDALPGEHQYLFEDCLKH 231
T+R ++ LK+M K L + H +L EDC+KH
Sbjct: 323 TMRDLSQMLKKMPQYQKEL--SKYSTHLHLAEDCMKH 357
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 25.8 bits (55), Expect = 4.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 109 RYTLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDL 168
RYTL E+KE E + E + R +E + E+ + E RI L+E ++ L
Sbjct: 359 RYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARI-LAELDVYAAL 417
Query: 169 AKYAMPESY 177
A+ A+ Y
Sbjct: 418 AEVAVRYGY 426
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 25.8 bits (55), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 105 VKSSRYTLRELKEVESFLPLNETNLERAKEFLVFV-DNEKVNAMSVLALE 153
VK Y R + E+E LP E +++ +E L V E+ A V+ E
Sbjct: 369 VKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 418
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 25.8 bits (55), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 105 VKSSRYTLRELKEVESFLPLNETNLERAKEFLVFV-DNEKVNAMSVLALE 153
VK Y R + E+E LP E +++ +E L V E+ A V+ E
Sbjct: 369 VKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 418
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 25.4 bits (54), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 3/44 (6%)
Query: 107 SSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNAMSVL 150
S + T+RE + +F P +T L E L + E VN++++L
Sbjct: 3 SQQQTVREWSGINTFAPATQTKL---LELLGNLKQEDVNSLTIL 43
>pdb|1PHP| 3-Phosphoglycerate Kinase (Pgk) (E.C.2.7.2.3)
Length = 394
Score = 25.4 bits (54), Expect = 5.8
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 123 PLNETNLERAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAK--------YAMP 174
P+ +TN E VD ++N VL LEN+R E +LAK Y
Sbjct: 87 PVAKTNEAVGDEVKAAVD--RLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVND 144
Query: 175 ESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKAL 213
H A++ + + ++L + KE++ L KAL
Sbjct: 145 AFGAAHRAHA-STEGIAHYLPAVAGFLMEKELEVLGKAL 182
>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
Length = 217
Score = 25.0 bits (53), Expect = 7.6
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 3/60 (5%)
Query: 61 LIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVES 120
LIH I + L H+Y F +KG +G ++ R A K RE+++ E+
Sbjct: 153 LIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAK---KHHPRWYREIEKAEA 209
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
Promelocytic Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 25.0 bits (53), Expect = 7.6
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 134 EFLVFVDNEKVNA-MSVLALENLRI-LLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQ 191
+ ++ VD+++ +A +VLA + +L N ++ + P++++ L Y+ A
Sbjct: 29 DVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTA---- 84
Query: 192 NFLTLRSSNKALKEMQDLAKALFDALPGEHQYLFEDCLK 230
TL++ + +DL L+ A E +YL E CLK
Sbjct: 85 ---TLQA------KAEDLDDLLYAAEILEIEYLEEQCLK 114
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 25.0 bits (53), Expect = 7.6
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 134 EFLVFVDNEKVNA-MSVLALENLRI-LLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQ 191
+ ++ VD+++ +A +VLA + +L N ++ + P++++ L Y+ A
Sbjct: 30 DVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTA---- 85
Query: 192 NFLTLRSSNKALKEMQDLAKALFDALPGEHQYLFEDCLK 230
TL++ + +DL L+ A E +YL E CLK
Sbjct: 86 ---TLQA------KAEDLDDLLYAAEILEIEYLEEQCLK 115
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,228,301
Number of Sequences: 13198
Number of extensions: 44446
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 10
length of query: 231
length of database: 2,899,336
effective HSP length: 85
effective length of query: 146
effective length of database: 1,777,506
effective search space: 259515876
effective search space used: 259515876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)