BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644784|ref|NP_206954.1| hypothetical protein
[Helicobacter pylori 26695]
         (91 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I84|S  Chain S, Cryo-Em Structure Of The Heavy Meromyos...    24  2.4
pdb|1BP3|A  Chain A, The Xray Structure Of A Growth Hormone-...    24  2.4
pdb|1A22|A  Chain A, Human Growth Hormone Bound To Single Re...    24  3.2
pdb|1AXI|A  Chain A, Structural Plasticity At The Hgh:hghbp ...    23  5.4
pdb|1HGU|    Human Growth Hormone                                  23  5.4
pdb|1JAD|A  Chain A, C-Terminal Domain Of Turkey Plc-Beta >g...    22  9.2

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
           Chicken Gizzard Smooth Muscle Myosin With Regulatory
           Light Chain In The Dephosphorylated State. Only C Alphas
           Provided For Regulatory Light Chain. Only Backbone Atoms
           Provided For S2 Fragment.
 pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
           Chicken Gizzard Smooth Muscle Myosin With Regulatory
           Light Chain In The Dephosphorylated State. Only C Alphas
           Provided For Regulatory Light Chain. Only Backbone Atoms
           Provided For S2 Fragment
          Length = 1184

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (50%)

Query: 54  LDLRDKHERLQQEITELQSKNVRLQKRLFELKELRPR 90
           L +  + E +Q +  ELQ    R QK   ELKEL  +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQK 886



>pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
           Complex
 pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
           Soluble Binding Protein
          Length = 191

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 39  YLGKLLFGGSSLEVYLDLRDKHERLQQEITELQSKNVR 76
           +   L++G S   VY  L+D  ER+Q  +  L+  + R
Sbjct: 97  FANSLVYGASDSNVYDLLKDLEERIQTLMGRLEDGSPR 134



>pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
          Length = 180

 Score = 23.9 bits (50), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (53%)

Query: 39  YLGKLLFGGSSLEVYLDLRDKHERLQQEITELQSK 73
           +   L++G S   VY  L+D  ER+Q  +  L+ +
Sbjct: 97  FANSLVYGASDSNVYDLLKDLEERIQTLMGRLEGQ 131



>pdb|1AXI|A Chain A, Structural Plasticity At The Hgh:hghbp Interface
          Length = 191

 Score = 23.1 bits (48), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 39  YLGKLLFGGSSLEVYLDLRDKHERLQ 64
           +   L++G S   VY  L+D  ER+Q
Sbjct: 97  FANSLVYGASDSNVYDLLKDLEERIQ 122



>pdb|1HGU|   Human Growth Hormone
          Length = 191

 Score = 23.1 bits (48), Expect = 5.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 26  LIVFFLLLLGF--GYYLGKLLFGGSSLEVYLDLRDKHERLQQEITELQSKNVR 76
           LI  +L  +GF    +   L++G S  +VY  L+D  E +Q  +  L+  + R
Sbjct: 82  LIQSWLEPVGFLRSVFANSLVYGASDSDVYDLLKDLEEGIQTLMGRLEDGSPR 134



>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
 pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
          Length = 251

 Score = 22.3 bits (46), Expect = 9.2
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 56  LRDKHERLQQEITELQSKNVR-LQKRLFELKE 86
           L +K  R QQ++ E Q++N+R +Q++  +L++
Sbjct: 186 LTEKTARYQQKLEEKQAENLRAIQEKEGQLQQ 217



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.146    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,124
Number of Sequences: 13198
Number of extensions: 16414
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 7
length of query: 91
length of database: 2,899,336
effective HSP length: 67
effective length of query: 24
effective length of database: 2,015,070
effective search space: 48361680
effective search space used: 48361680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)