BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646145|ref|NP_208328.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolob... 27 1.5
pdb|1C1K|A Chain A, Bacteriophage T4 Gene 59 Helicase Assem... 26 3.3
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 26 3.3
pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum... 26 3.3
pdb|1LWU|A Chain A, Crystal Structure Of Fragment D From La... 26 4.4
pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkaloph... 25 5.7
pdb|1A3H| Endoglucanase Cel5a From Bacillus Agaradherans ... 25 7.5
pdb|1QQP|2 Chain 2, Foot-And-Mouth Disease Virus OLIGOSACCH... 25 7.5
pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agara... 25 7.5
pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endo... 25 7.5
pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME ... 25 7.5
pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) F... 25 7.5
pdb|1QGC|2 Chain 2, Structure Of The Complex Of An Fab Frag... 25 9.7
>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4-Phenylimidazole Bound
pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4-Phenylimidazole Bound
pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 27.3 bits (59), Expect = 1.5
Identities = 13/55 (23%), Positives = 27/55 (48%)
Query: 6 FQEITNKRKFFASSSTGEQFENQFRNELKKHFSEINGDLTEELSHIEEKPNKEIK 60
F E+ K + + + F ++ E+ +FS+ + DLT +E+ N +I+
Sbjct: 5 FSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIR 59
>pdb|1C1K|A Chain A, Bacteriophage T4 Gene 59 Helicase Assembly Protein
Length = 217
Score = 26.2 bits (56), Expect = 3.3
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 102 DFLVFIFDYV---VGIEIKFSKNDKG----EKNLQTS--RPMWNSNLPKPNAIYVYGVAN 152
D LVF +Y+ I+ KF ++ + K ++ S + ++ N PK + Y++ +
Sbjct: 94 DALVFYREYIGRLKQIKFKFEEDIRNIYYFSKKVEVSAFKEIFEYN-PKVQSSYIFKLLQ 152
Query: 153 ANITFFKGSDILSYETREVLLKYFDILDKDERSLKN 188
+NI +S+ET +L + +I+DK + N
Sbjct: 153 SNI--------ISFETFILLDSFLNIIDKHDEQTDN 180
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 26.2 bits (56), Expect = 3.3
Identities = 17/76 (22%), Positives = 29/76 (37%), Gaps = 13/76 (17%)
Query: 3 EKVFQEITNKRKFFASSSTGEQFENQFRNEL-------------KKHFSEINGDLTEELS 49
EKV E+T K+ ++ G + RN L +K + D L
Sbjct: 64 EKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLL 123
Query: 50 HIEEKPNKEIKTTFNQ 65
H+E P + ++ N+
Sbjct: 124 HVETPPREVLEALANE 139
>pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum-Sensing
Transcription Factor Complexed With Pheromone And Dna
pdb|1L3L|B Chain B, Crystal Structure Of A Bacterial Quorum-Sensing
Transcription Factor Complexed With Pheromone And Dna
pdb|1L3L|C Chain C, Crystal Structure Of A Bacterial Quorum-Sensing
Transcription Factor Complexed With Pheromone And Dna
pdb|1L3L|D Chain D, Crystal Structure Of A Bacterial Quorum-Sensing
Transcription Factor Complexed With Pheromone And Dna
pdb|1H0M|A Chain A, Three-Dimensional Structure Of The Quorum Sensing Protein
Trar Bound To Its Autoinducer And To Its Target Dna
pdb|1H0M|B Chain B, Three-Dimensional Structure Of The Quorum Sensing Protein
Trar Bound To Its Autoinducer And To Its Target Dna
pdb|1H0M|C Chain C, Three-Dimensional Structure Of The Quorum Sensing Protein
Trar Bound To Its Autoinducer And To Its Target Dna
pdb|1H0M|D Chain D, Three-Dimensional Structure Of The Quorum Sensing Protein
Trar Bound To Its Autoinducer And To Its Target Dna
Length = 234
Score = 26.2 bits (56), Expect = 3.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 179 LDKDERSLKNALKDLENPFGFAPYIRKAYEHKRNFLTTTRLKASFRPTTF 228
++ DE LK L D+ + FGF Y +H R+ T ++ T F
Sbjct: 14 IEGDECILKTGLADIADHFGFTGYAYLHIQH-RHITAVTNYHRQWQSTYF 62
>pdb|1LWU|A Chain A, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|D Chain D, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|G Chain G, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|J Chain J, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
Length = 119
Score = 25.8 bits (55), Expect = 4.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 17 ASSSTGEQFENQFRNELKKHFSEINGDLTEELSHIEEKPNKEIK 60
A S T Q N+ NEL+ +SE+ +L + H++ + N +++
Sbjct: 1 AVSDTSGQTLNE-HNELEVRYSEVLRELERRIIHLQRRINMQLQ 43
>pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkalophilic Bacillus Sp
Length = 308
Score = 25.4 bits (54), Expect = 5.7
Identities = 22/96 (22%), Positives = 39/96 (39%), Gaps = 9/96 (9%)
Query: 27 NQFRNELKKHF---SEINGDLTEELSHIEEKPNKEIKTTFNQLKK------QVLEKNHPH 77
N ++ E K F SE+ GD + I +PN T NQ+K V+ N P+
Sbjct: 109 NIYKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSDVTWDNQIKPYAEEVIPVIRDNDPN 168
Query: 78 TLKNPFSNLTSHFLYQPFGSQNYPDFLVFIFDYVVG 113
+ + S ++ +Q +++ F + G
Sbjct: 169 NIVIVGTGTWSQDVHHAADNQLADPNVMYAFHFYAG 204
>pdb|1A3H| Endoglucanase Cel5a From Bacillus Agaradherans At 1.6a Resolution
pdb|3A3H| Cellotriose Complex Of The Endoglucanase Cel5a From Bacillus
Agaradherans At 1.6 A Resolution
pdb|2A3H| Cellobiose Complex Of The Endoglucanase Cel5a From Bacillus
Agaradherans At 2.0 A Resolution
Length = 300
Score = 25.0 bits (53), Expect = 7.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 27 NQFRNELKKHF---SEINGDLTEELSHIEEKPNKEIKTTFNQLKK------QVLEKNHPH 77
N ++ E K F SE+ GD + I +PN T NQ+K ++ N P+
Sbjct: 106 NIYKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSDVTWGNQIKPYAEEVIPIIRNNDPN 165
Query: 78 TL 79
+
Sbjct: 166 NI 167
>pdb|1QQP|2 Chain 2, Foot-And-Mouth Disease Virus OLIGOSACCHARIDE RECEPTOR
Complex.
pdb|1FOD|2 Chain 2, Foot-And-Mouth Disease Virus (Reduced)
pdb|1BBT|2 Chain 2, Foot-And-Mouth Disease Virus
Length = 218
Score = 25.0 bits (53), Expect = 7.5
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 21 TGEQFENQFRNELKKHFSEINGDLTEELSHIEEKPNKEIKTTFNQL-------------- 66
T + F EL + G LT+ +++ + E+ NQ
Sbjct: 71 TSDSFGRCHLLELPTDHKGVYGSLTDSYAYMRNGWDVEVTAVGNQFNGGCLLVAMVPELC 130
Query: 67 ---KKQVLEKN-HPHTLKNPFSNLTSHFLYQPFGSQNYPDFLV 105
K+++ + PH NP +N+T+H G Y + V
Sbjct: 131 SIQKRELYQLTLFPHQFINPRTNMTAHITVPFVGVNRYDQYKV 173
>pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
2',4'-Dinitrophenyl 2-Deoxy-2-Fluoro-B-D-Cellotrioside
pdb|1E5J|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
Methyl-4ii-S-Alpha-Cellobiosyl-4ii-Thio
Beta-Cellobioside
pdb|1QHZ|A Chain A, Native Tetragonal Structure Of The Endoglucanase Cel5a
From Bacillus Agaradhaerens
pdb|1QI0|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With Cellobiose
Length = 305
Score = 25.0 bits (53), Expect = 7.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 27 NQFRNELKKHF---SEINGDLTEELSHIEEKPNKEIKTTFNQLKK------QVLEKNHPH 77
N ++ E K F SE+ GD + I +PN T NQ+K ++ N P+
Sbjct: 109 NIYKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSDVTWGNQIKPYAEEVIPIIRNNDPN 168
Query: 78 TL 79
+
Sbjct: 169 NI 170
>pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endoglucanase Cel5a
From Bacillus Agaradharens At 1.1 A Resolution In The
Tetragonal Crystal Form
Length = 304
Score = 25.0 bits (53), Expect = 7.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 27 NQFRNELKKHF---SEINGDLTEELSHIEEKPNKEIKTTFNQLKK------QVLEKNHPH 77
N ++ E K F SE+ GD + I +PN T NQ+K ++ N P+
Sbjct: 109 NIYKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSDVTWGNQIKPYAEEVIPIIRNNDPN 168
Query: 78 TL 79
+
Sbjct: 169 NI 170
>pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution
pdb|1H2J|A Chain A, Endoglucanase Cel5a In Complex With Unhydrolysed And
Covalently Linked 2,4-Dinitrophenyl-2-Deoxy-2-
Fluoro-Cellobioside At 1.15 A Resolution
pdb|7A3H|A Chain A, Native Endoglucanase Cel5a Catalytic Core Domain At 0.95
Angstroms Resolution
pdb|8A3H|A Chain A, Cellobiose-Derived Imidazole Complex Of The Endoglucanase
Cel5a From Bacillus Agaradhaerens At 0.97 A Resolution
pdb|1HF6|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Orthorhombic Crystal Form In Complex With Cellotriose
pdb|4A3H|A Chain A, 2',4' Dinitrophenyl-2-Deoxy-2-Fluro-B-D-Cellobioside
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhaerens At 1.6 A Resolution
pdb|6A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.6 Angstrom Resolution
pdb|5A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellobiosylENZYME INTERMEDIATE COMPLEX
Of The Endoglucanase Cel5a From Bacillus Agaradhearans
At 1.8 Angstroms Resolution
Length = 303
Score = 25.0 bits (53), Expect = 7.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 27 NQFRNELKKHF---SEINGDLTEELSHIEEKPNKEIKTTFNQLKK------QVLEKNHPH 77
N ++ E K F SE+ GD + I +PN T NQ+K ++ N P+
Sbjct: 109 NIYKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSDVTWGNQIKPYAEEVIPIIRNNDPN 168
Query: 78 TL 79
+
Sbjct: 169 NI 170
>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 25.0 bits (53), Expect = 7.5
Identities = 12/55 (21%), Positives = 26/55 (46%)
Query: 6 FQEITNKRKFFASSSTGEQFENQFRNELKKHFSEINGDLTEELSHIEEKPNKEIK 60
F E+ K + + + ++ E+ +FS+ + DLT +E+ N +I+
Sbjct: 5 FSEMRKKDPVYYDGNIWQVLSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIR 59
>pdb|1QGC|2 Chain 2, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
pdb|1FMD|2 Chain 2, Foot And Mouth Disease Virus Type C-S8c1
Length = 218
Score = 24.6 bits (52), Expect = 9.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 75 HPHTLKNPFSNLTSHFLYQPFGSQNYPDF 103
+PH NP +N+T+H G Y +
Sbjct: 143 YPHQFINPRTNMTAHITVPYVGVNRYDQY 171
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,343,694
Number of Sequences: 13198
Number of extensions: 56551
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 13
length of query: 228
length of database: 2,899,336
effective HSP length: 85
effective length of query: 143
effective length of database: 1,777,506
effective search space: 254183358
effective search space used: 254183358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)