BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646149|ref|NP_208333.1| hypothetical protein
[Helicobacter pylori 26695]
(136 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoser... 29 0.21
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phos... 29 0.21
pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phos... 29 0.21
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 29 0.21
pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease F... 27 0.82
pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease F... 27 0.82
pdb|1JIG|A Chain A, Dlp-2 From Bacillus Anthracis >gi|21730... 27 1.1
pdb|1FUE|A Chain A, Flavodoxin From Helicobacter Pylori 26 1.8
pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis >gi|21730... 24 6.9
pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldo... 24 6.9
pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldo... 24 6.9
pdb|3CYR| Cytochrome C3 From Desulfovibrio Desulfuricans ... 24 6.9
pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain F... 23 9.0
pdb|1GM4|A Chain A, Oxidised Structure Of Cytochrome C3 Fro... 23 9.0
pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazo... 23 9.0
pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing... 23 9.0
>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 28.9 bits (63), Expect = 0.21
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 66 FTNKLVVS-GKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGE 113
F N+L+V GK TG VE EV++ G + KI+ E + + +G+
Sbjct: 119 FANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGD 167
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 28.9 bits (63), Expect = 0.21
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 66 FTNKLVVS-GKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGE 113
F N+L+V GK TG VE EV++ G + KI+ E + + +G+
Sbjct: 119 FANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGD 167
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 28.9 bits (63), Expect = 0.21
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 66 FTNKLVVS-GKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGE 113
F N+L+V GK TG VE EV++ G + KI+ E + + +G+
Sbjct: 119 FANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGD 167
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 28.9 bits (63), Expect = 0.21
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 66 FTNKLVVS-GKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGE 113
F N+L+V GK TG VE EV++ G + KI+ E + + +G+
Sbjct: 119 FANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGD 167
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 26.9 bits (58), Expect = 0.82
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 9/66 (13%)
Query: 70 LVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGALLINEQ 129
L VSG F G +A++ + + + +G + S E +LIG + I+ G L + E
Sbjct: 518 LFVSGHFKGNYKAQLTRLNHITNCNGAVLSVE------ELLIG---GEMIKAGTLTLEEV 568
Query: 130 EKKIEN 135
+K N
Sbjct: 569 RRKFNN 574
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 568
Score = 26.9 bits (58), Expect = 0.82
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 9/66 (13%)
Query: 70 LVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGALLINEQ 129
L VSG F G +A++ + + + +G + S E +LIG + I+ G L + E
Sbjct: 507 LFVSGHFKGNYKAQLTRLNHITNCNGAVLSVE------ELLIG---GEMIKAGTLTLEEV 557
Query: 130 EKKIEN 135
+K N
Sbjct: 558 RRKFNN 563
>pdb|1JIG|A Chain A, Dlp-2 From Bacillus Anthracis
pdb|1JIG|B Chain B, Dlp-2 From Bacillus Anthracis
pdb|1JIG|C Chain C, Dlp-2 From Bacillus Anthracis
pdb|1JIG|D Chain D, Dlp-2 From Bacillus Anthracis
Length = 146
Score = 26.6 bits (57), Expect = 1.1
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 2/74 (2%)
Query: 30 ELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTGTVEAEVVEIMP 89
+LH +YH +V G +H K + G+ + E+ L + GK T++ E +
Sbjct: 23 KLH-NYHWYVTGPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMK-EYLATSS 80
Query: 90 LGHLDGKISSQELV 103
+ K S++E+V
Sbjct: 81 VNEGTSKESAEEMV 94
>pdb|1FUE|A Chain A, Flavodoxin From Helicobacter Pylori
Length = 163
Score = 25.8 bits (55), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Query: 44 EGVVH----SKSTVVIGQTGSVVGEIFTNKLVVSGKFTGTV 80
EG+ H +K+ V+GQT + +K V GKF G V
Sbjct: 97 EGIFHIYEKAKAGKVVGQTSTDGYHFAASKAVEGGKFVGLV 137
>pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis
pdb|1JI5|B Chain B, Dlp-1 From Bacillus Anthracis
pdb|1JI5|C Chain C, Dlp-1 From Bacillus Anthracis
pdb|1JI5|D Chain D, Dlp-1 From Bacillus Anthracis
Length = 142
Score = 23.9 bits (50), Expect = 6.9
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 21 IAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTGTV 80
+A + + +LH ++H +V G +H K + ++ + + EI L + GK T+
Sbjct: 10 VADWSVLFTKLH-NFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATM 68
Query: 81 EAEVVEI 87
+ E +EI
Sbjct: 69 K-EYLEI 74
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
Length = 358
Score = 23.9 bits (50), Expect = 6.9
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 4 FDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGV 46
F N S A G + + QG I G + +H+H E GV
Sbjct: 60 FSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGV 102
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1ZEN| Class Ii Fructose-1,6-Bisphosphate Aldolase
Length = 358
Score = 23.9 bits (50), Expect = 6.9
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 4 FDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGV 46
F N S A G + + QG I G + +H+H E GV
Sbjct: 60 FSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGV 102
>pdb|3CYR| Cytochrome C3 From Desulfovibrio Desulfuricans Atcc 27774p
Length = 107
Score = 23.9 bits (50), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 7 NNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELE 44
+ K + AK G + T KGE L Y +H GEL+
Sbjct: 38 DGKESYAKCGSSGCHDDLTAKKGEKSLYYVVHAKGELK 75
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
Length = 96
Score = 23.5 bits (49), Expect = 9.0
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 20 IIAQGT-KIKGELHL-DYHLHVDG-ELEGVVHSKSTVVIGQTGSVV 62
+I QG + G +H D L V+G LEG H ++ + TG VV
Sbjct: 40 VIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVV 85
>pdb|1GM4|A Chain A, Oxidised Structure Of Cytochrome C3 From Desulfovibrio
Desulfuricans Atcc 27774 At Ph 7.6
pdb|1GMB|A Chain A, Reduced Structure Of Cytochrome C3 From Desulfovibrio
Desulfuricans Atcc 27774 At Ph 7.6
Length = 107
Score = 23.5 bits (49), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 7 NNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELE 44
+ K + AK G + T KGE L Y +H GEL+
Sbjct: 38 DGKESYAKCGSSGCHDDLTAKKGEKSLYYVVHARGELK 75
>pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|C Chain C, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|B Chain B, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|D Chain D, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
Length = 345
Score = 23.5 bits (49), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 39 VDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTGTVE-AEVVE 86
+ G EG + S ++V G+T + G V+G G VE +E+++
Sbjct: 123 ISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIID 171
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 23.5 bits (49), Expect = 9.0
Identities = 15/52 (28%), Positives = 23/52 (43%), Gaps = 4/52 (7%)
Query: 9 KSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS 60
+ A A+ G + GT +KG D V L+G S+ VV+ G+
Sbjct: 113 EKAGARAGDVIVTVDGTAVKGXSLYD----VSDLLQGEADSQVEVVLHAPGA 160
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.134 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 764,194
Number of Sequences: 13198
Number of extensions: 29975
Number of successful extensions: 71
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 16
length of query: 136
length of database: 2,899,336
effective HSP length: 79
effective length of query: 57
effective length of database: 1,856,694
effective search space: 105831558
effective search space used: 105831558
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)