BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646150|ref|NP_208334.1| toxR-activated gene (tagE)
[Helicobacter pylori 26695]
(312 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin.... 28 1.3
pdb|1BKE| Human Serum Albumin In A Complex With Myristic ... 28 1.3
pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmurama... 27 2.3
pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorisma... 26 5.1
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To ... 25 8.7
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d... 25 8.7
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d... 25 8.7
>pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin. Phases Determined
By Molecular Replacement Method, Using Low Resolution
Structure Model Of Tetragonal Form Of Human Serum
Albumin
pdb|1AO6|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1AO6|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1BM0|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1BM0|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1H9Z|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
R-(+) Enantiomer Of Warfarin
pdb|1HA2|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
S- (-) Enantiomer Of Warfarin
pdb|1GNJ|A Chain A, Human Serum Albumin Complexed With
Cis-5,8,11,14-Eicosatetraenoic Acid (Arachidonic Acid)
pdb|1GNI|A Chain A, Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid
(Oleic Acid)
pdb|1E7A|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7A|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7G|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) Human Serum Albumin Complexed With
Myristic Acid
pdb|1E7C|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
General Anesthetic Halothane
pdb|1BJ5| Human Serum Albumin Complexed With Myristic Acid
pdb|1E7I|A Chain A, Human Serum Albumin Complexed With Octadecanoic Acid
(Stearic Acid)
pdb|1E7E|A Chain A, Human Serum Albumin Complexed With Decanoic Acid (Capric
Acid)
pdb|1E7H|A Chain A, Human Serum Albumin Complexed With Hexadecanoic Acid
(Palmitic Acid)
pdb|1E7F|A Chain A, Human Serum Albumin Complexed With Dodecanoic Acid (Lauric
Acid)
pdb|1E78|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1E7B|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E78|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1E7B|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
Length = 585
Score = 28.1 bits (61), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (55%)
Query: 48 LLVLNQEIKNIDKQHALITKEFEKKKETNEKLSLQMDEF 86
+ L+++ + I KQ AL+ K K T E+L MD+F
Sbjct: 513 ICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDF 551
>pdb|1BKE| Human Serum Albumin In A Complex With Myristic Acid And
Tri-Iodobenzoic Acid
Length = 581
Score = 28.1 bits (61), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (55%)
Query: 48 LLVLNQEIKNIDKQHALITKEFEKKKETNEKLSLQMDEF 86
+ L+++ + I KQ AL+ K K T E+L MD+F
Sbjct: 510 ICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDF 548
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate--Alanine Ligase
(Tm0231) From Thermotoga Maritima At 2.3 A Resolution
Length = 469
Score = 27.3 bits (59), Expect = 2.3
Identities = 24/121 (19%), Positives = 57/121 (46%), Gaps = 9/121 (7%)
Query: 13 DSKGSRYINVHI----LFRQIGLYALLSVVGSLLFLGISLLVLNQEIKNIDKQHALITKE 68
+ G RY+ + + + A++++ SL + +L +E + + ++ ++ +
Sbjct: 260 EKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD 319
Query: 69 FEKKKETNEKLSLQMDEFLDDLQLSGERINDLEEVVGVNRPEE----EKEEGNFSSRLDV 124
E + + DE + LQ + E + + E++V + +P E+E+GNF+ L +
Sbjct: 320 PETNIYVIDDYAHTPDEIRNLLQTAKE-VFENEKIVVIFQPHRYSRLEREDGNFAKALQL 378
Query: 125 A 125
A
Sbjct: 379 A 379
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
Length = 269
Score = 26.2 bits (56), Expect = 5.1
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 118 FSSRLDVAGITGLQKSFIMRLI 139
++ RLD AG+ G+ + F +RL+
Sbjct: 188 YTPRLDQAGVNGIMRQFCIRLL 209
>pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
Length = 446
Score = 25.4 bits (54), Expect = 8.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 167 HNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKVFHPFGFK 214
H++ D+S A+ T V A+A G + W GN PF K
Sbjct: 339 HSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIK 386
>pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 442
Score = 25.4 bits (54), Expect = 8.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 167 HNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKVFHPFGFK 214
H+ D+S A+ T V A+A G + W GN PF K
Sbjct: 335 HSDNHFDISLAMFTHVAAAAPGAITAIDTHWIWQEGNQRLTKEPFEIK 382
>pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 442
Score = 25.4 bits (54), Expect = 8.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 167 HNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKVFHPFGFK 214
H+ D+S A+ T V A+A G + W GN PF K
Sbjct: 335 HSDNHFDISLAMFTHVAAAAPGAITAIDTHWIWQEGNQRLTKEPFEIK 382
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,770,727
Number of Sequences: 13198
Number of extensions: 77061
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 7
length of query: 312
length of database: 2,899,336
effective HSP length: 88
effective length of query: 224
effective length of database: 1,737,912
effective search space: 389292288
effective search space used: 389292288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)