BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644785|ref|NP_206955.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 26 3.6
pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homol... 25 4.7
pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of T... 25 4.7
pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homol... 25 4.7
pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), ... 25 8.0
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.8 bits (55), Expect = 3.6
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 35 GGFNGIYDSYFKEIHVDLPTS--ARILKQITLTYQDIDGSIHSKVVGIDKGIDWHYPLKL 92
GG G+ D+ K + L+ I + Y + + V+ G D +
Sbjct: 819 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHI 878
Query: 93 SQHTLDP-----AAFEKRYQIQDFDFLMASNTM---ILRSPYKILRSFVLVNPYRIVLDT 144
+ +LD AAFEKRY++ D L +T+ +L S +IL L +++LD
Sbjct: 879 EKQSLDTIGGSDAAFEKRYRV---DLLNTDHTLDPSLLESGSEILGDLKL----QVLLDE 931
Query: 145 QKGPLDIYQNMDLNQKFFSHIKV 167
+ Y+ + ++KF + V
Sbjct: 932 E------YKQLVKDRKFLREVFV 948
>pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 361
Score = 25.4 bits (54), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Query: 36 GFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGS 72
GF +YDS I +DLPT ++ T T +DG+
Sbjct: 61 GFQAVYDS----IALDLPTDRDDVETSTETILGVDGN 93
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 25.4 bits (54), Expect = 4.7
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Query: 7 MIGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIY---DSYFKEIHVD 51
M L ++ VLL+ NPF E N + ++ N Y + FKEI ++
Sbjct: 186 MWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIE 233
>pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 358
Score = 25.4 bits (54), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Query: 36 GFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGS 72
GF +YDS I +DLPT ++ T T +DG+
Sbjct: 58 GFQAVYDS----IALDLPTDRDDVETSTETILGVDGN 90
>pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), VP2, PH7.5, T4
Degrees C
Length = 587
Score = 24.6 bits (52), Expect = 8.0
Identities = 8/26 (30%), Positives = 19/26 (72%)
Query: 60 KQITLTYQDIDGSIHSKVVGIDKGID 85
+ +++TY++ +G+I V+G KG++
Sbjct: 219 RDLSVTYENQEGTIEHNVMGTPKGMN 244
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.143 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,185,129
Number of Sequences: 13198
Number of extensions: 48634
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 5
length of query: 200
length of database: 2,899,336
effective HSP length: 84
effective length of query: 116
effective length of database: 1,790,704
effective search space: 207721664
effective search space used: 207721664
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)