BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646153|ref|NP_208337.1| hypothetical protein
[Helicobacter pylori 26695]
(170 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a M... 26 2.1
pdb|1AMX| Collagen-Binding Domain From A Staphylococcus A... 26 2.1
pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-... 26 2.7
pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi 26 2.7
pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f M... 26 2.7
pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l ... 26 2.7
pdb|1EJ6|A Chain A, Reovirus Core 25 3.6
pdb|1YCR|A Chain A, Mdm2 Bound To The Transactivation Domai... 25 6.1
pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From B... 24 8.0
pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapi... 24 8.0
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 26.2 bits (56), Expect = 2.1
Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 9/94 (9%)
Query: 79 EITNVTDTSITQNKEGFTTF--YRATVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQDPLN 136
++ N+T T +T NK TF Y S N Y GTQ G Y A + N
Sbjct: 114 DVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGNYQGAGSSWYNYN 169
Query: 137 TYQNRYYAINQAVEQTLTKFVAQ---IAYEGKFN 167
R + QT T + +A+ G++N
Sbjct: 170 QSNIRNPGSEEYGRQTFTHAIGHALGLAHPGEYN 203
>pdb|1AMX| Collagen-Binding Domain From A Staphylococcus Aureus Adhesin
Length = 180
Score = 26.2 bits (56), Expect = 2.1
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 31 DSVYVKLIVNLPNPENSVEFKDLMNRLVVQRFQSRLASEKDADSIIIIEITNVTDT--SI 88
D+ +V+ +N+ N E S KD+ + +Q Q + D ++ I NVT T +
Sbjct: 46 DTTHVRWFLNINN-EKSYVSKDITIKDQIQGGQ-----QLDLSTLNI----NVTGTHSNY 95
Query: 89 TQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQDSGY--YN-YAVNLQDPLNTYQNRYYAI 145
+ T F +A T DN + T GY YN +++N + + Q + +
Sbjct: 96 YSGQSAITDFEKAFPGSKITVDNTKNTIDVTIPQGYGSYNSFSINYKTKITNEQQKEFVN 155
Query: 146 N 146
N
Sbjct: 156 N 156
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 25.8 bits (55), Expect = 2.7
Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 9/94 (9%)
Query: 79 EITNVTDTSITQNKEGFTTF--YRATVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQDPLN 136
++ N+T T +T NK TF Y S N Y GTQ G Y A + N
Sbjct: 97 DVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGNYQGAGSSWYNYN 152
Query: 137 TYQNRYYAINQAVEQTLTKFVAQ---IAYEGKFN 167
R + QT T + +A+ G++N
Sbjct: 153 QSNIRNPGSEEYGRQTFTHKIGHALGLAHPGEYN 186
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 25.8 bits (55), Expect = 2.7
Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 9/94 (9%)
Query: 79 EITNVTDTSITQNKEGFTTF--YRATVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQDPLN 136
++ N+T T +T NK TF Y S N Y GTQ G Y A + N
Sbjct: 114 DVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGNYQGAGSSWYNYN 169
Query: 137 TYQNRYYAINQAVEQTLTKFVAQ---IAYEGKFN 167
R + QT T + +A+ G++N
Sbjct: 170 QSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYN 203
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 25.8 bits (55), Expect = 2.7
Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 9/94 (9%)
Query: 79 EITNVTDTSITQNKEGFTTF--YRATVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQDPLN 136
++ N+T T +T NK TF Y S N Y GTQ G Y A + N
Sbjct: 114 DVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGNYQGAGSSWYNYN 169
Query: 137 TYQNRYYAINQAVEQTLTKFVAQ---IAYEGKFN 167
R + QT T + +A+ G++N
Sbjct: 170 QSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYN 203
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 25.8 bits (55), Expect = 2.7
Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 9/94 (9%)
Query: 79 EITNVTDTSITQNKEGFTTF--YRATVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQDPLN 136
++ N+T T +T NK TF Y S N Y GTQ G Y A + N
Sbjct: 97 DVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGNYQGAGSSWYNYN 152
Query: 137 TYQNRYYAINQAVEQTLTKFVAQ---IAYEGKFN 167
R + QT T + +A+ G++N
Sbjct: 153 QSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYN 186
>pdb|1EJ6|A Chain A, Reovirus Core
Length = 1289
Score = 25.4 bits (54), Expect = 3.6
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 80 ITNVTDTSITQN-KEGFTTFYRA-----TVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQD 133
I N TD + ++ E F+ RA ++ Y + G Q +DS Y V
Sbjct: 248 IINATDAMLLESCLEQFSANVRARPAQPVTRLDQCYHLRWGAQYVGEDSLTYRLGVLSLL 307
Query: 134 PLNTYQNRYYAINQAVEQTLTKFVAQIAYEG 164
N YQ Q + L+ FV+QI +G
Sbjct: 308 ATNGYQLARPIPRQLTNRWLSSFVSQIMSDG 338
>pdb|1YCR|A Chain A, Mdm2 Bound To The Transactivation Domain Of P53
Length = 109
Score = 24.6 bits (52), Expect = 6.1
Identities = 18/86 (20%), Positives = 40/86 (45%), Gaps = 5/86 (5%)
Query: 35 VKLIVNLPNPENSVEFKDLMNRLVVQRFQSRLASEKDADSI-----IIIEITNVTDTSIT 89
+KL+ ++ +++ K+++ L RL EK + ++ ++ V S+
Sbjct: 19 LKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVK 78
Query: 90 QNKEGFTTFYRATVSVNYTYDNKRGT 115
++++ +T YR V VN + GT
Sbjct: 79 EHRKIYTMIYRNLVVVNQQESSDSGT 104
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl- 12
Length = 419
Score = 24.3 bits (51), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 91 NKEGFTTFYRATVSVNYTYD--NKR 113
NK G+T ++ T V Y Y+ NKR
Sbjct: 349 NKNGYTRYWNDTAKVPYLYNASNKR 373
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens
pdb|1ELK|B Chain B, Vhs Domain Of Tom1 Protein From H. Sapiens
Length = 157
Score = 24.3 bits (51), Expect = 8.0
Identities = 19/75 (25%), Positives = 30/75 (39%), Gaps = 3/75 (4%)
Query: 4 LLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQRFQ 63
L +L K CG++ A +SV V+ I+ NP V K L ++Q +
Sbjct: 73 LALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN---LIQSWA 129
Query: 64 SRLASEKDADSIIII 78
S D ++ I
Sbjct: 130 DAFRSSPDLTGVVTI 144
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 947,638
Number of Sequences: 13198
Number of extensions: 35255
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 10
length of query: 170
length of database: 2,899,336
effective HSP length: 82
effective length of query: 88
effective length of database: 1,817,100
effective search space: 159904800
effective search space used: 159904800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)