BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646154|ref|NP_208338.1| leucyl-tRNA synthetase
(leuS) [Helicobacter pylori 26695]
(806 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 664 0.0
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 136 1e-32
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 124 5e-29
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 75 3e-14
pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methion... 55 4e-08
pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escheric... 55 4e-08
pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermoph... 54 5e-08
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Syn... 43 1e-04
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 35 0.043
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 35 0.043
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 35 0.043
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 35 0.043
pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synth... 35 0.043
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 35 0.043
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form ... 31 0.62
pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of... 28 5.2
pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) Th... 28 5.2
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conforma... 28 5.2
pdb|1A8E| Human Serum Transferrin, Recombinant N-Terminal... 28 5.2
pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lob... 28 5.2
pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q 28 5.2
pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e 28 5.2
pdb|1D3K|A Chain A, Human Serum Transferrin 28 5.2
pdb|1D4N|A Chain A, Human Serum Transferrin 28 5.2
pdb|1BP5|C Chain C, Human Serum Transferrin, Recombinant N-... 28 5.2
pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase F... 27 6.8
pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhyd... 27 6.8
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 27 6.8
pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase ... 27 6.8
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna... 27 6.8
pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of T... 27 8.9
pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) Th... 27 8.9
pdb|1BLF| Structure Of Diferric Bovine Lactoferrin At 2.8... 27 8.9
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 664 bits (1713), Expect = 0.0
Identities = 379/889 (42%), Positives = 521/889 (57%), Gaps = 110/889 (12%)
Query: 6 IEKKWQEFWWKNKSFEPKDDFNLP----KKYILSMLPYPSGEIHMGHVRNYTIGDALARY 61
IE KWQ FW + + KD LP K+Y+L M PYPSG++HMGH++NYT+GD LAR+
Sbjct: 9 IEAKWQRFWEEKGFMKAKD---LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARF 65
Query: 62 YRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWTYENIENMQKEFEALGFSFSKNREF 121
R+ Y VLHPMG+D+FG+PAENAA+K G+HPK WTY NI ++ +G + +RE
Sbjct: 66 RRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREV 125
Query: 122 ATSDPDYTKFEQRFFIDLWEKGLIYRKKAMLNWCPNDKTVLANEQVIDGRCWRC-DTEVI 180
T +P+Y ++ Q F+ +WEKGL YR K ++NWCP +TVLANEQV++GRCWR DT V
Sbjct: 126 TTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVE 185
Query: 181 QKELYQYYLKITNYAEELLKDLEALEDHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKA 240
++EL Q+YL+IT YAE LLKDLE L +WP +V MQ+ WIG+S G + F + + ++
Sbjct: 186 KRELEQWYLRITAYAERLLKDLEGL--NWPEKVKAMQRAWIGRSEGAEILFPVEGKEVR- 242
Query: 241 CNGIQEIEVFTTRADTIYGVTYIAIAPEHPL-VEHAIKQVSQEVSKMIKAILNTTQRER- 298
I VFTTR DT++G T++ +APEHPL +E A + +EV ++A T+ ER
Sbjct: 243 ------IPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296
Query: 299 --ALEKKGAFLGIYAIHPLTKQKIPVWVANFALANYGSGALMGVPACDERDFEFANLYHI 356
EK G FLG YA++P T ++IP+W A++ L YG+GA+M VPA D+RD+EFA + +
Sbjct: 297 AEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356
Query: 357 PIKVITQSP-QNLPHTKEE------VLKNSGEWSDLSSSVAREQIIAYFEKENLGKRVIN 409
PIK + + P + LP E ++ NSG + S + ++IA+ E++ LGK +
Sbjct: 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVT 416
Query: 410 YRLQDWGVSRQRYWGAPIPMIHCNHCGI--VPETQLPVTLP-----EDIVIDGEGNPLEK 462
YRL+DW +SRQRYWG PIPM+HC CG+ VPE +LPV LP EDI G+ +PLE
Sbjct: 417 YRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK-SPLEA 475
Query: 463 HASWKFTQCPKCHKNALRETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVD 522
H + T CPKC A R+TDTMDTF SSWY+LRYT P N R FD +MPVD
Sbjct: 476 HPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDR--LPFDPEKANAWMPVD 533
Query: 523 TYIGGIEHAILHLLYARFFTKALRDLGYLHLDEPFKQLITQGMVL--------------- 567
YIGG+EHA+LHLLY+RFFTK L DLG + ++EPF+ L TQGMVL
Sbjct: 534 QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVV 593
Query: 568 -----------------------KNGAK----------------MSKSKGNVVSPKEILK 588
K GA+ MSKSKGN V +K
Sbjct: 594 RLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVK 653
Query: 589 KYGADAARLFILFAAPPAKELEWNDSALEGAHRFIKRLY----DKANAINPTTSKPEFKE 644
+ GAD AR+ ILFAAPP E+ W + ++GA RF+ R+Y + A+ T+ + +
Sbjct: 654 EQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEA 713
Query: 645 VSLNEAQKLGRKKVYEALKKSHEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEG 704
+ + + G K++E LKK E A FNT IA+ ME LNAL +R +
Sbjct: 714 LEGKDRELYG--KLHETLKKVTEDL----EALRFNTAIAALMEFLNALYEYRKDRPVTPV 767
Query: 705 YFV----LLQILEPIIPHTAWELSERLFKRENFKP--IAIDEDALMEDFMTLGLTINGKR 758
Y LQ+L P PH A EL + F+ +DE AL +D + + + +NG+
Sbjct: 768 YRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRV 827
Query: 759 RAELKVNINASKE--EIIVLAKKELEKYLENASVKKEIYVPNKLVNFVI 805
R + + +A E L + + +LE V KEIYVP K++N V+
Sbjct: 828 RGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 136 bits (342), Expect = 1e-32
Identities = 201/864 (23%), Positives = 317/864 (36%), Gaps = 191/864 (22%)
Query: 5 NIEKKWQEFWWKNKSFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDALARYYRL 64
++E KW E W KN F P I P +G +HMGH + ++ DAL RY R+
Sbjct: 11 SVEPKWAEKWAKNP-FVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRM 69
Query: 65 HHYNVLHPMGFDSFGMPA----ENAAIKHGIHPKT---------------WTYENIENMQ 105
+ + G D G+ E +K G KT W E+ +
Sbjct: 70 RGFEAVWLPGTDHAGIATQVVVERLLLKEG---KTRHDLGREKFLERVWQWKEESGGTIL 126
Query: 106 KEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIYRKKAMLNWCPNDKTVLANE 165
K+ + LG S +RE T D ++ + F + +GL YR ++NWCP
Sbjct: 127 KQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCP--------- 177
Query: 166 QVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLEALEDHWPSQVLIMQKNWIGKSS 225
RC+T L DLE + P ++ ++ G
Sbjct: 178 --------RCET--------------------TLSDLEVETEPTPGKLYTLRYEVEGG-- 207
Query: 226 GLQFGFKIADECLKACNGIQEIEVFTTRADTIYGVTYIAIAPEHPLVEHAIKQVSQEVSK 285
GF IE+ T R +T++ IA+ PE H
Sbjct: 208 ----GF---------------IEIATVRPETVFADQAIAVHPEDERYRH----------- 237
Query: 286 MIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKIPVWVANFALANYGSGALMGVPACDE 345
LG A PLT+ IP+ ++G+GAL PA D
Sbjct: 238 --------------------LLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDP 277
Query: 346 RDFEFANLYHI-PIKVITQSPQNLPHTKEEVLKNSGEWSDLSSSVAREQIIAYFEKE--- 401
D+E + + P+ VI + E L+ + +V + + KE
Sbjct: 278 LDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 337
Query: 402 --------NLGKRVINYRLQDWGVSRQRYWGAPIPMIHCNHCGIVPET------------ 441
G + W + + + + VPE
Sbjct: 338 TIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 397
Query: 442 -------------QLPVTLPEDIVIDGEGNP---LEKHASWKFTQCPKCHKNALRETDTM 485
Q+P ED P LE S + P+ R+ D
Sbjct: 398 KDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLK----RDEDVF 453
Query: 486 DTFIQSS-WYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARFFTKA 544
DT+ S+ W P+ + LK F P D + G + IL L +R
Sbjct: 454 DTWFSSALWPLSTLGWPEETED--------LKAFYPGDVLVTGYD--ILFLWVSRMEVSG 503
Query: 545 LRDLGYLHLDEPFKQLITQGMVL-KNGAKMSKSKGNVVSPKEILKKYGADAARLFILFAA 603
+G + PFK ++ G+VL + G KMSKSKGNV+ P E++++YGADA R +++ A
Sbjct: 504 YHFMG----ERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLA 559
Query: 604 PPAKELEWNDSALEGAHRFIKRLYDKANAINPTTSKPEFKEVSLNEAQKLGRKKV---YE 660
+++ + LE A F +LY+ A + + + KE + A + R ++ E
Sbjct: 560 TGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVE 619
Query: 661 ALKKSHEIFNKAESAYSFNTLIAS-----CMEALN-ALSAQNNE--RILCEGYFVLLQIL 712
+ +E + A++A L+ S +EA AL A N R L E VLL++L
Sbjct: 620 EITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLL 679
Query: 713 EPIIPHTAWELSERLFKRENF------KPIAIDEDALMEDFMTLGLTINGKRRAELKVNI 766
P++P EL + L +E +P DE+A F L + R + + +
Sbjct: 680 HPMMPFLTSELYQALTGKEELALEAWPEPGGRDEEA-ERAFEALKQAVTAVRALKAEAGL 738
Query: 767 NASKEEIIVLAKKELEKYLENASV 790
+ +E+ V + E EN V
Sbjct: 739 PPA-QEVRVYLEGETAPVEENLEV 761
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 124 bits (310), Expect = 5e-29
Identities = 140/635 (22%), Positives = 245/635 (38%), Gaps = 142/635 (22%)
Query: 38 PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHP---- 93
PY +G +HMGH N + D + RY + + + G+D+ G+P E A K G+
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 94 --------KTWTYENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLI 145
K + E IE +K+F LG N + T P+Y + R F ++ +KGLI
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLI 176
Query: 146 YRKKAMLNWCPNDKTVLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLEAL 205
Y+ K + W P+ ++ LA ++ +Y+ K
Sbjct: 177 YKGKKPVYWSPSSESSLAEAEI------------------EYHDK--------------- 203
Query: 206 EDHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKACNGIQEIE----VFTTRADTIYGVT 261
+S+ + F + D+ G+ + + ++TT TI
Sbjct: 204 -----------------RSASIYVAFNVKDD-----KGVVDADAKFIIWTTTPWTIPSNV 241
Query: 262 YIAIAPEHPLVEHAIKQ----VSQEVSKMIKAILNTTQRERALEKK--GAFL-GIYAIHP 314
I + PE ++ + +++ +S + L+ + LEK+ G L + A HP
Sbjct: 242 AITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHP 301
Query: 315 LTKQKIPVWVANFALANYGSGALMGVPACDERDFEFANLYHIPI---------------- 358
++ V + + G+G + P E D+ Y +P+
Sbjct: 302 FLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQ 361
Query: 359 ----------KVITQ-------------SPQNLPH---TKEEVLKNSGEWSDLSSSVARE 392
K +T + PH TK+ V+ + S S R+
Sbjct: 362 FEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQ 421
Query: 393 QIIAYFE----KENLGKRVINYRLQD---WGVSRQRYWGAPIPMIHCNHCGIVPETQLPV 445
I+ E K N GK I ++D W +SRQR WG P+P+ + + G + T+ V
Sbjct: 422 DILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETV 480
Query: 446 TLPEDIVIDGEGNPLEKHASWKFTQCPKCHKNALRETDTMDTFIQSSWYFLRYTTPKNQR 505
D+ + N + + H + T T +T I W+ +
Sbjct: 481 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWF-------DSGS 533
Query: 506 ENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARFFTKALRDLGYLHLDEPFKQLITQGM 565
++ + + P D Y+ G + Y +F ++ P+K L++ G
Sbjct: 534 SHRGVLETRPELSFPADMYLEGSDQ------YRGWFNSSITTSVATRGVSPYKFLLSHGF 587
Query: 566 VLK-NGAKMSKSKGNVVSPKEILKKYGADAARLFI 599
V+ G KMSKS GNV+ P +++K+ GAD ARL++
Sbjct: 588 VMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWV 622
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 75.1 bits (183), Expect = 3e-14
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 412 LQDWGVSRQRYWGAPIPMIHCNHCG------IVPETQLPVTLPEDIVIDGEGNPLEKHAS 465
L DW +SR RYWG P+P+ C CG E + T P D P +
Sbjct: 441 LVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFD----PHRPYVD 496
Query: 466 WKFTQCPKCHKNALRETDTMDTFIQSS---WYFLRYTTPKNQRENQAFDQNYLKYFMPVD 522
C C R +D + S + L Y + ++F P D
Sbjct: 497 QVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESF---------PAD 546
Query: 523 TYIGGIEHAILHLLYARFFTKALRDLGYLHLDE-PFKQLITQGMVL-KNGAKMSKSKGNV 580
GI+ R + +L LG + FK +I G++L + G KMSKSKGNV
Sbjct: 547 FIAEGIDQT-------RGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV 599
Query: 581 VSPKEILKKYGADAARLFILFAAPP 605
V P +I++K+GADA R +I +APP
Sbjct: 600 VDPWDIIRKFGADALRWYIYVSAPP 624
Score = 53.9 bits (128), Expect = 7e-08
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 2 DFINIEKKWQEFWWKNKSFEPKDDFNL--PKKYILSMLPYPSGEIHMGHVRNYTIGDALA 59
+F +E++ FW + K F+ + P+ + P +G H+GH + + D
Sbjct: 9 NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFP 68
Query: 60 RYYRLHHYNVLHPMGFDSFGMPAE-NAAIKHGIHPKTWTY------------ENIENMQK 106
RY + Y G+D+ G+P E K G+ K E++ +K
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEK 128
Query: 107 EFEA----LGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIYRKKAMLNWCPNDKTVL 162
E+EA + + +AT +P Y + +L+++GL+YR ++ +CP T L
Sbjct: 129 EWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
Query: 163 ANEQVIDG 170
++ +V G
Sbjct: 189 SSHEVALG 196
Score = 34.7 bits (78), Expect = 0.043
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 16/72 (22%)
Query: 138 DLWEKGLIYRKKAMLNWCPNDKTVLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEE 197
DL +GL++++++ L+ P+ CWRC T ++ +++K T + +E
Sbjct: 369 DLRGRGLLFKEESYLHSYPH--------------CWRCSTPLMYYATESWFIKNTLFKDE 414
Query: 198 LLKDLEALEDHW 209
L+++ + E HW
Sbjct: 415 LIRNNQ--EIHW 424
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 54.7 bits (130), Expect = 4e-08
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 30 KKYILSMLPYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKH 89
K + LPY +G IH+GH+ + D RY R+ + V D+ G P A +
Sbjct: 7 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 66
Query: 90 GIHPKTWTYENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIYRKK 149
GI P+ E + Q +F GF+ S + +T + + + + L E G I +
Sbjct: 67 GITPEQMIGEMSQEHQTDF--AGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 124
Query: 150 AMLNWCPNDKTVLANEQVIDGRCWRC 175
+ P +K + ++ + G C +C
Sbjct: 125 ISQLYDP-EKGMFLPDRFVKGTCPKC 149
Score = 38.9 bits (89), Expect = 0.002
Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 49/247 (19%)
Query: 560 LITQGMVLKNGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDSALEGA 619
L G V NGAKMSKS+G + L + AD+ R + + A + ++ D LE
Sbjct: 321 LFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYY--YTAKLSSRIDDIDLNLED- 377
Query: 620 HRFIKRLYDKANAINPTTSKPEFKEVSLNE------AQKLGRKKVYEALKKSHEIFNKAE 673
F++R+ A+ +N + +N+ A +L ++Y+ + E+ +A
Sbjct: 378 --FVQRV--NADIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW 433
Query: 674 SAYSFNTLIASCMEALNALSAQNNE----------------RILCEG----YFVLLQILE 713
+ F + M + + +E + +C + VL+ L+
Sbjct: 434 ESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLK 493
Query: 714 PIIPHTAWELSERLFKRENFKPIAIDEDALMEDFMTLGLTINGKR-------RAELKVNI 766
P++P +L+ER E F + D + + LG +N + +++ +
Sbjct: 494 PVLP----KLTER---AEAFLNTELTWDGIQQPL--LGHKVNPFKALYNRIDMRQVEALV 544
Query: 767 NASKEEI 773
ASKEE+
Sbjct: 545 EASKEEV 551
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 54.7 bits (130), Expect = 4e-08
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 30 KKYILSMLPYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKH 89
K + LPY +G IH+GH+ + D RY R+ + V D+ G P A +
Sbjct: 6 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
Query: 90 GIHPKTWTYENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIYRKK 149
GI P+ E + Q +F GF+ S + +T + + + + L E G I +
Sbjct: 66 GITPEQMIGEMSQEHQTDF--AGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 150 AMLNWCPNDKTVLANEQVIDGRCWRC 175
+ P +K + ++ + G C +C
Sbjct: 124 ISQLYDP-EKGMFLPDRFVKGTCPKC 148
Score = 38.1 bits (87), Expect = 0.004
Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 49/247 (19%)
Query: 560 LITQGMVLKNGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDSALEGA 619
L G V NGAKMSKS+G + L + AD+ R + + A + ++ D LE
Sbjct: 320 LFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYY--YTAKLSSRIDDIDLNLED- 376
Query: 620 HRFIKRLYDKANAINPTTSKPEFKEVSLNE------AQKLGRKKVYEALKKSHEIFNKAE 673
F++R+ A+ +N + +N+ A +L +Y+ + E+ +A
Sbjct: 377 --FVQRV--NADIVNKVVNLASRNAGFINKRFDGVLASELADPALYKTFTDAAEVIGEAW 432
Query: 674 SAYSFNTLIASCMEALNALSAQNNE----------------RILCEG----YFVLLQILE 713
+ F + M + + +E + +C + VL+ L+
Sbjct: 433 ESREFGKAVREIMALADLANRYVDEQAPWVVAKQAGRDADLQAICSMGINLFRVLMTYLK 492
Query: 714 PIIPHTAWELSERLFKRENFKPIAIDEDALMEDFMTLGLTINGKR-------RAELKVNI 766
P++P +L+ER E F + D + + LG +N + +++ +
Sbjct: 493 PVLP----KLTER---AEAFLNTELTWDGIQQPL--LGHKVNPFKALYNRIDMRQVEALV 543
Query: 767 NASKEEI 773
ASKEE+
Sbjct: 544 EASKEEV 550
>pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 54.3 bits (129), Expect = 5e-08
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 7/199 (3%)
Query: 32 YILSMLPYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGI 91
Y+ + + Y + E H+GH + D LAR++RL Y G D G AA G
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 92 HPKTWTYENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIYRKKAM 151
PK + ++ ++ LG ++ + T++ + K Q ++E G IY +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAY--DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 152 LNWCPNDKTVLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLEALED---- 207
+C + + +++++G C V +++ Y+ ++ Y L + ++ D
Sbjct: 124 GLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRP 183
Query: 208 -HWPSQVLIMQKNWIGKSS 225
+ ++VL M IG S
Sbjct: 184 EGYRNEVLAMLAEPIGDLS 202
Score = 44.3 bits (103), Expect = 5e-05
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 557 FKQLITQGMVL-KNGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDSA 615
++ L G +L +G KMSK+ GNVV P +L+KYG DA R ++L P ++ ++ A
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEA 340
Query: 616 L 616
L
Sbjct: 341 L 341
>pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
Length = 461
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 564 GMVLKNGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDSALEGAHRFI 623
GMV+ + KMSKS GN + +++LK Y A+ R F L + +L +++ L+ A +
Sbjct: 258 GMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYF-LMSGHYRSQLNYSEENLKQARAAL 316
Query: 624 KRLYDKANAINPTTS 638
+RLY + T +
Sbjct: 317 ERLYTALRGTDKTVA 331
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/67 (26%), Positives = 27/67 (39%)
Query: 45 HMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWTYENIENM 104
H+GH R + D +ARY R Y + + A ++G I M
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96
Query: 105 QKEFEAL 111
K+F+AL
Sbjct: 97 HKDFDAL 103
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 34.7 bits (78), Expect = 0.043
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 38 PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWT 97
P P+G +H+GH ++ + +A+ Y+ + FD +P
Sbjct: 33 PEPNGYLHIGHAKSICLNFGIAQDYKGQ-----CNLRFDD-------------TNPVKED 74
Query: 98 YENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIY 146
E +E+++ + E LGF +S N +++ DY + I+L KGL Y
Sbjct: 75 IEYVESIKNDVEWLGFHWSGNVRYSS---DYFDQLHAYAIELINKGLAY 120
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 34.7 bits (78), Expect = 0.043
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 38 PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWT 97
P P+G +H+GH ++ + +A+ Y+ + FD +P
Sbjct: 33 PEPNGYLHIGHAKSICLNFGIAQDYKGQ-----CNLRFDD-------------TNPVKED 74
Query: 98 YENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIY 146
E +E+++ + E LGF +S N +++ DY + I+L KGL Y
Sbjct: 75 IEYVESIKNDVEWLGFHWSGNVRYSS---DYFDQLHAYAIELINKGLAY 120
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 34.7 bits (78), Expect = 0.043
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 38 PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWT 97
P P+G +H+GH ++ + +A+ Y+ + FD +P
Sbjct: 33 PEPNGYLHIGHAKSICLNFGIAQDYKGQ-----CNLRFDD-------------TNPVKED 74
Query: 98 YENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIY 146
E +E+++ + E LGF +S N +++ DY + I+L KGL Y
Sbjct: 75 IEYVESIKNDVEWLGFHWSGNVRYSS---DYFDQLHAYAIELINKGLAY 120
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 34.7 bits (78), Expect = 0.043
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 38 PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWT 97
P P+G +H+GH ++ + +A+ Y+ + FD +P
Sbjct: 34 PEPNGYLHIGHAKSICLNFGIAQDYKGQ-----CNLRFDD-------------TNPVKED 75
Query: 98 YENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIY 146
E +E+++ + E LGF +S N +++ DY + I+L KGL Y
Sbjct: 76 IEYVESIKNDVEWLGFHWSGNVRYSS---DYFDQLHAYAIELINKGLAY 121
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 34.7 bits (78), Expect = 0.043
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 40 PSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTW 96
P+ E+H+GH+RN +GDA+AR VL D G A + TW
Sbjct: 114 PNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTW 170
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 34.7 bits (78), Expect = 0.043
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 38 PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWT 97
P P+G +H+GH ++ + +A+ Y+ + FD +P
Sbjct: 33 PEPNGYLHIGHAKSICLNFGIAQDYKGQ-----CNLRFDD-------------TNPVKED 74
Query: 98 YENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQRFFIDLWEKGLIY 146
E +E+++ + E LGF +S N +++ DY + I+L KGL Y
Sbjct: 75 IEYVESIKNDVEWLGFHWSGNVRYSS---DYFDQLHAYAIELINKGLAY 120
>pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 30.8 bits (68), Expect = 0.62
Identities = 22/71 (30%), Positives = 37/71 (51%), Gaps = 12/71 (16%)
Query: 49 VRNYTIG-----DALARYYRLHHY---NVLHPMGFDSFGMPAENAAIKHGIHPKTWTYEN 100
+RN T+G D L +Y LH NV + + D PA+ A + + + PK T E+
Sbjct: 95 MRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNAD----PAKAARLANDLSPKKTTTES 150
Query: 101 IENMQKEFEAL 111
++ +Q + +AL
Sbjct: 151 LKAVQAKVKAL 161
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The Glucosamine-6-
Phosphate Deaminase From E.Coli
Length = 266
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 39 YPSGEIHMGHVRNYTIGD--ALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHP 93
+ +G++ HV + + + L + + +Y+ +H FD +PAEN + +G P
Sbjct: 56 HKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAP 112
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 274 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 304
>pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|1DEA|A Chain A, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
Inorganic Phosphate
pdb|1DEA|B Chain B, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
Inorganic Phosphate
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl- Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl- Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS6|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 2.2a Resolution
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOR|A Chain A, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
2-Deoxi-2-Amino-Glucitol 6-Phosphate
pdb|1HOR|B Chain B, Mol_id: 1; Molecule: Glucosamine 6-Phosphate Deaminase;
Chain: A, B; Ec: 5.3.1.10; Engineered: Yes; Heterogen:
2-Deoxi-2-Amino-Glucitol 6-Phosphate
Length = 266
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 39 YPSGEIHMGHVRNYTIGD--ALARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHP 93
+ +G++ HV + + + L + + +Y+ +H FD +PAEN + +G P
Sbjct: 56 HKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAP 112
>pdb|1A8E| Human Serum Transferrin, Recombinant N-Terminal Lobe
pdb|1A8F| Human Serum Transferrin, Recombinant N-Terminal Lobe
Length = 329
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 272 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 302
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In
Pichia Pastoris
Length = 330
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 271 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 301
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q
Length = 334
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 274 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 304
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e
Length = 334
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 274 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 304
>pdb|1D3K|A Chain A, Human Serum Transferrin
Length = 329
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 272 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 302
>pdb|1D4N|A Chain A, Human Serum Transferrin
Length = 329
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 272 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 302
>pdb|1BP5|C Chain C, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|D Chain D, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BTJ|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
pdb|1BTJ|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
Length = 337
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 274 FGKDKSKEFQLFSSPHGKDLLFKDS----AHGFLK 304
>pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
pdb|1QJC|B Chain B, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
Length = 158
Score = 27.3 bits (59), Expect = 6.8
Identities = 28/122 (22%), Positives = 53/122 (42%), Gaps = 15/122 (12%)
Query: 271 LVEHAIKQVSQEVSKMIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKIPVWVANFALA 330
+ +H I ++ SK K + +R ++ A LG + + +ANFA
Sbjct: 27 MFDHVILAIAASPSK--KPMFTLEERVALAQQATAHLGNVEVVGFSDL-----MANFARN 79
Query: 331 NYGSGALMGVPACDERDFEFANLYHIPIKVITQSPQNLPHTKEEVLKNSGEWSDLSSSVA 390
+ + + G+ A + ++E L H+ + +P + L S EWS +SSS+
Sbjct: 80 QHATVLIRGLRAVADFEYEM-QLAHM-------NRHLMPELESVFLMPSKEWSFISSSLV 131
Query: 391 RE 392
+E
Sbjct: 132 KE 133
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Subsprate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 27.3 bits (59), Expect = 6.8
Identities = 24/84 (28%), Positives = 33/84 (38%), Gaps = 15/84 (17%)
Query: 571 AKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDSALEGAHRFIKRLYDKA 630
A+ S+ K K +L KYG D FI+ A H I LYD+
Sbjct: 401 ARGSECKKQAAMAKRVLHKYGLDYVAEFIV--------------APRDMHHVIDVLYDRT 446
Query: 631 NAINPTTSKPEFKEVSLNEAQKLG 654
N + F E+ L+E +K G
Sbjct: 447 NPEETKRADACFNEL-LDEFEKEG 469
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 27.3 bits (59), Expect = 6.8
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 30 KKYILSML-PYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLH--------------PMG 74
KK I+ P + H GH+R+ IG LA Y + V+ +G
Sbjct: 143 KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG 202
Query: 75 FDSFGMPAENAAIKHGIHPKTWTYENI-ENMQKEFEALGFSFSKN 118
F+ +G E A +K IH Y I +++++E +++ S N
Sbjct: 203 FERYG--NEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTN 245
>pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1GN8|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1B6T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1B6T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
Length = 159
Score = 27.3 bits (59), Expect = 6.8
Identities = 28/122 (22%), Positives = 53/122 (42%), Gaps = 15/122 (12%)
Query: 271 LVEHAIKQVSQEVSKMIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKIPVWVANFALA 330
+ +H I ++ SK K + +R ++ A LG + + +ANFA
Sbjct: 28 MFDHVILAIAASPSK--KPMFTLEERVALAQQATAHLGNVEVVGFSDL-----MANFARN 80
Query: 331 NYGSGALMGVPACDERDFEFANLYHIPIKVITQSPQNLPHTKEEVLKNSGEWSDLSSSVA 390
+ + + G+ A + ++E L H+ + +P + L S EWS +SSS+
Sbjct: 81 QHATVLIRGLRAVADFEYEM-QLAHM-------NRHLMPELESVFLMPSKEWSFISSSLV 132
Query: 391 RE 392
+E
Sbjct: 133 KE 134
>pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 27.3 bits (59), Expect = 6.8
Identities = 25/101 (24%), Positives = 43/101 (41%), Gaps = 19/101 (18%)
Query: 30 KKYILSMLPYPSGEIHMGHVRN----YTIGDALA-RYYRLHHYNVLH------------P 72
+KY++ PSG +H+G+ R Y +G AL + Y + H ++ P
Sbjct: 20 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVP 79
Query: 73 MGF-DSFGMPAENAAIKHGIHPKTWTYENIENMQKEFEALG 112
+ D GMP G H +++ + ++E E LG
Sbjct: 80 QEWKDYLGMPISEVPDPWGCH-ESYAEHFMRKFEEEVEKLG 119
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 26.9 bits (58), Expect = 8.9
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 17/74 (22%)
Query: 666 HEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEGYFVLLQILEPIIPHTAWELSE 725
H++ + A +S TL+ + +N A+ N+ QI+E I+ +E
Sbjct: 177 HDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-----------QIIENIMN------AE 219
Query: 726 RLFKRENFKPIAID 739
F E FK I+I+
Sbjct: 220 YTFDEEAFKEISIE 233
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 26.9 bits (58), Expect = 8.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 590 YGADAARLFILFAAPPAKELEWNDSALEGAHRFIK 624
+G D ++ F LF++P K+L + DS AH F+K
Sbjct: 274 FGKDKSKEFQLFSSPHGKDLLFADS----AHGFLK 304
>pdb|1BLF| Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 26.9 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Query: 588 KKYGADAARLFILFAAPPA-KELEWNDSAL 616
+K+G + +R F LF +PP ++L + DSAL
Sbjct: 276 EKFGKNKSRSFQLFGSPPGQRDLLFKDSAL 305
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,862,385
Number of Sequences: 13198
Number of extensions: 211053
Number of successful extensions: 553
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 56
length of query: 806
length of database: 2,899,336
effective HSP length: 96
effective length of query: 710
effective length of database: 1,632,328
effective search space: 1158952880
effective search space used: 1158952880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)