BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646155|ref|NP_208339.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(112 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 25 2.0
pdb|1A16| Aminopeptidase P From E. Coli With The Inhibito... 25 2.6
pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FR... 25 2.6
pdb|1JAW| Aminopeptidase P From E. Coli Low Ph Form 25 2.6
pdb|1AZ9| Aminopeptidase P From E. Coli 25 2.6
pdb|1H6H|A Chain A, Structure Of The Px Domain From P40phox... 24 4.5
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 24 4.5
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 24 4.5
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 24 4.5
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 23 5.8
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 25.0 bits (53), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 11 FSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFAS 54
F+L+ TT +G L P + L L+ +V +IKR AS
Sbjct: 151 FTLVGATTRSGLLSSPLRSAFGIILELDFYTVKELKEIIKRAAS 194
>pdb|1A16| Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
Length = 440
Score = 24.6 bits (52), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 23 LYEPNTVVLFVA--LALNLISVTLKIGVIKRFASELLASS 60
LY P T +L V + ++S +K+G++K EL+A +
Sbjct: 303 LYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQN 342
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 24.6 bits (52), Expect = 2.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 22 FLYEPNTVVLFVALALNLISVTLKIGVIKRFASELLASSLA 62
+LYEP+ L L + + GV++ ASE A +A
Sbjct: 188 YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVA 228
>pdb|1JAW| Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 24.6 bits (52), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 23 LYEPNTVVLFVA--LALNLISVTLKIGVIKRFASELLASS 60
LY P T +L V + ++S +K+G++K EL+A +
Sbjct: 303 LYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQN 342
>pdb|1AZ9| Aminopeptidase P From E. Coli
Length = 457
Score = 24.6 bits (52), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 23 LYEPNTVVLFVA--LALNLISVTLKIGVIKRFASELLASS 60
LY P T +L V + ++S +K+G++K EL+A +
Sbjct: 320 LYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQN 359
>pdb|1H6H|A Chain A, Structure Of The Px Domain From P40phox Bound To
Phosphatidylinositol 3-Phosphate
Length = 143
Score = 23.9 bits (50), Expect = 4.5
Identities = 14/59 (23%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
Query: 50 KRFASELLASSLATVLHLIPAFVFLQILNNLVTAYMLMIGALISNAFSL-IFLLIESVV 107
+RF + +S+LA L +PA V++ + + + + A + + SL +++L++ V
Sbjct: 70 ERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDV 128
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 23.9 bits (50), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 11 FSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFAS 54
F+L+ TT +G L P + L L+ +V +IKR AS
Sbjct: 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 23.9 bits (50), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 11 FSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFAS 54
F+L+ TT +G L P + L L+ +V +IKR AS
Sbjct: 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 23.9 bits (50), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 11 FSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFAS 54
F+L+ TT +G L P + L L+ +V +IKR AS
Sbjct: 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 23.5 bits (49), Expect = 5.8
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 11 FSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFAS 54
F+L+ TT +G L P + L L+ +V +IKR AS
Sbjct: 151 FTLVGSTTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.330 0.142 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,407
Number of Sequences: 13198
Number of extensions: 10586
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 112
length of database: 2,899,336
effective HSP length: 76
effective length of query: 36
effective length of database: 1,896,288
effective search space: 68266368
effective search space used: 68266368
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)