BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646158|ref|NP_208342.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(127 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FJG|C Chain C, Structure Of The Thermus Thermophilus 3... 30 0.064
pdb|1I94|C Chain C, Crystal Structures Of The Small Ribosom... 30 0.064
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 26 1.6
pdb|1ED1|A Chain A, Crystal Structure Of Simian Immunodefic... 25 2.1
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 25 3.5
pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Diki... 25 3.5
pdb|1DIK| Pyruvate Phosphate Dikinase 25 3.5
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 25 3.5
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 25 3.5
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 23 7.8
>pdb|1FJG|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|C Chain C, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 239
Score = 30.4 bits (67), Expect = 0.064
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 43 LTKGDKIVTQGGLIVEVLKAEANFFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVI 102
+ K ++ +GG + VL+ E AKL+ VA + E+ L+ P+V
Sbjct: 70 VAKPGVVIGRGGERIRVLREEL------------AKLTGKNVALNVQEVQNPNLSAPLVA 117
Query: 103 QQGREEISAKLSGAKTLKQ 121
Q+ E+I + + + +KQ
Sbjct: 118 QRVAEQIERRFAVRRAIKQ 136
>pdb|1I94|C Chain C, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 238
Score = 30.4 bits (67), Expect = 0.064
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 43 LTKGDKIVTQGGLIVEVLKAEANFFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVI 102
+ K ++ +GG + VL+ E AKL+ VA + E+ L+ P+V
Sbjct: 69 VAKPGVVIGRGGERIRVLREEL------------AKLTGKNVALNVQEVQNPNLSAPLVA 116
Query: 103 QQGREEISAKLSGAKTLKQ 121
Q+ E+I + + + +KQ
Sbjct: 117 QRVAEQIERRFAVRRAIKQ 135
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 25.8 bits (55), Expect = 1.6
Identities = 13/31 (41%), Positives = 16/31 (50%)
Query: 58 EVLKAEANFFSVKLNDDTTAKLSKNYVAFKL 88
E+LK E F VK ND KL K + +L
Sbjct: 315 EILKQEIKVFFVKYNDPIYVKLEKLDIMIRL 345
>pdb|1ED1|A Chain A, Crystal Structure Of Simian Immunodeficiency Virus Matrix
Antigen (Siv Ma) At 100k.
pdb|1ECW|A Chain A, Crystal Structure Of Simian Immunodeficiency Virus Matrix
Antigen (Siv Ma) At 293k
Length = 135
Score = 25.4 bits (54), Expect = 2.1
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 69 VKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIV-IQQGREEISAKL-----SGAKTLK 120
++L K +V + +ELD+FGLAE ++ ++G ++I + L +G++ LK
Sbjct: 19 IRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLK 76
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 24.6 bits (52), Expect = 3.5
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 31 QQQKKHKEMIESLTKGDKI-VTQGGLIVEVLKAEANFFSVKLND----------DTTAKL 79
+Q KK K G I + + L + + EA FFS ND D K
Sbjct: 725 EQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKF 784
Query: 80 SKNYVAFKLDE------LDQFGLAE--PIVIQQGRE 107
+Y K+ E LDQ G+ + + +++GR+
Sbjct: 785 LDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQ 820
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 3.5
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 31 QQQKKHKEMIESLTKGDKI-VTQGGLIVEVLKAEANFFSVKLND----------DTTAKL 79
+Q KK K G I + + L + + EA FFS ND D K
Sbjct: 725 EQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKF 784
Query: 80 SKNYVAFKLDE------LDQFGLAE--PIVIQQGRE 107
+Y K+ E LDQ G+ + + +++GR+
Sbjct: 785 LDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQ 820
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 24.6 bits (52), Expect = 3.5
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 31 QQQKKHKEMIESLTKGDKI-VTQGGLIVEVLKAEANFFSVKLND----------DTTAKL 79
+Q KK K G I + + L + + EA FFS ND D K
Sbjct: 726 EQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKF 785
Query: 80 SKNYVAFKLDE------LDQFGLAE--PIVIQQGRE 107
+Y K+ E LDQ G+ + + +++GR+
Sbjct: 786 LDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQ 821
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 3.5
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 31 QQQKKHKEMIESLTKGDKI-VTQGGLIVEVLKAEANFFSVKLND----------DTTAKL 79
+Q KK K G I + + L + + EA FFS ND D K
Sbjct: 725 EQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKF 784
Query: 80 SKNYVAFKLDE------LDQFGLAE--PIVIQQGRE 107
+Y K+ E LDQ G+ + + +++GR+
Sbjct: 785 LDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQ 820
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 3.5
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 31 QQQKKHKEMIESLTKGDKI-VTQGGLIVEVLKAEANFFSVKLND----------DTTAKL 79
+Q KK K G I + + L + + EA FFS ND D K
Sbjct: 725 EQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKF 784
Query: 80 SKNYVAFKLDE------LDQFGLAE--PIVIQQGRE 107
+Y K+ E LDQ G+ + + +++GR+
Sbjct: 785 LDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQ 820
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 23.5 bits (49), Expect = 7.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 51 TQGGLIVEVLKAEANFFSVKLNDDTTAKL 79
+ + + +KA + F++ +L DD AKL
Sbjct: 116 SSASITIGTIKAVSGFYNKELKDDEIAKL 144
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,635
Number of Sequences: 13198
Number of extensions: 18595
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 2,899,336
effective HSP length: 78
effective length of query: 49
effective length of database: 1,869,892
effective search space: 91624708
effective search space used: 91624708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)