BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644786|ref|NP_206956.1| shikimic acid kinase I
(aroK) [Helicobacter pylori 26695]
(162 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 77 1e-15
pdb|1SHK|A Chain A, The Three-Dimensional Structure Of Shik... 71 5e-14
pdb|1SHK|B Chain B, The Three-Dimensional Structure Of Shik... 71 7e-14
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shik... 70 9e-14
pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Er... 69 3e-13
pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase F... 67 8e-13
pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase >... 32 0.027
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 28 0.39
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 28 0.39
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 28 0.39
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 28 0.39
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 28 0.39
pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen P... 26 2.5
pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphory... 25 3.3
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin P... 25 3.3
pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form ... 25 3.3
pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structu... 25 4.3
pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Ma... 25 4.3
pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 25 4.3
pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Es... 25 4.3
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 25 5.7
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 25 5.7
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 25 5.7
pdb|3GRX| Nmr Structure Of Escherichia Coli Glutaredoxin ... 24 7.4
pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In... 24 7.4
pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escher... 24 7.4
pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++ >gi|1942... 24 9.7
pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Compl... 24 9.7
pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted ... 24 9.7
pdb|1K3R|A Chain A, Crystal Structure Of The Hypothetical P... 24 9.7
pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase Fr... 24 9.7
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 76.6 bits (187), Expect = 1e-15
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 2 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEK 61
+++ L+G MG+GKS++ ++L L +E D+D I +R G V +F+ GE+ FR E+
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREE 64
Query: 62 NLIDELKTLKTPHVISTGGGIV----MHENLKGLGTTFYLKMDFETLIKRLNQKERE-KR 116
+I+EL T K V++TGGG V L G YL+ T+ K+L + +R+ KR
Sbjct: 65 KVINEL-TEKQGIVLATGGGSVKSRETRNRLSARGVVVYLE---TTIEKQLARTQRDKKR 120
Query: 117 PLLNNLTQAKELFE----KRQALYEKNASFII 144
PLL+ T +E+ E +R LYE+ A I
Sbjct: 121 PLLHVETPPREVLEALANERNPLYEEIADVTI 152
>pdb|1SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 71.2 bits (173), Expect = 5e-14
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNL 63
+ ++G G GK+++ +EL AL E +DTD+ + G++V ++ G FR E
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRES-- 62
Query: 64 IDELKTLKTPH-VISTGGGIVMHEN----LKGLGTTFYLKMDFETLIKRLN-QKEREKRP 117
+ L+ + TP+ V++TGGG+V+ E ++ GT YL E L RL + +RP
Sbjct: 63 -EALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASPQAHQRP 121
Query: 118 LLNNLTQAKEL---FEKRQALYEKNASFIIDA 146
L A+E+ +R+ALY+ A +++DA
Sbjct: 122 TLTGRPIAEEMEAVLREREALYQDVAHYVVDA 153
>pdb|1SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
Length = 173
Score = 70.9 bits (172), Expect = 7e-14
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNL 63
+ ++G G GK+++ +EL AL E +DTD+ + G++V ++ G FR E
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRES-- 62
Query: 64 IDELKTLKTPH-VISTGGGIVMHEN----LKGLGTTFYLKMDFETLIKRL-NQKEREKRP 117
+ L+ + TP+ V++TGGG+V+ E ++ GT YL E L RL + +RP
Sbjct: 63 -EALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLAASPQAHQRP 121
Query: 118 LLNNLTQAKEL---FEKRQALYEKNASFIIDA 146
L A+E+ +R+ALY+ A +++DA
Sbjct: 122 TLTGAPIAEEMEAVLREREALYQDVAHYVVDA 153
>pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 70.5 bits (171), Expect = 9e-14
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNL 63
+ ++G G GK+++ +EL AL E +DTD+ + G++V ++ G FR E
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRES-- 62
Query: 64 IDELKTLKTPH-VISTGGGIVMHEN----LKGLGTTFYLKMDFETLIKRL-NQKEREKRP 117
+ L+ + TP+ V++TGGG+V+ E ++ GT YL E L RL + +RP
Sbjct: 63 -EALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLAASPQAHQRP 121
Query: 118 LLNNLTQAKEL---FEKRQALYEKNASFIIDA 146
L A+E+ +R+ALY+ A +++DA
Sbjct: 122 TLTGRPIAEEMEAVLREREALYQDVAHYVVDA 153
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
Length = 173
Score = 68.9 bits (167), Expect = 3e-13
Identities = 47/152 (30%), Positives = 81/152 (52%), Gaps = 12/152 (7%)
Query: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNL 63
+ ++G G G +++ +EL AL E +DTD+ + G++V ++ G FR E
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRES-- 62
Query: 64 IDELKTLKTPH-VISTGGGIVMHEN----LKGLGTTFYLKMDFETLIKRLNQK-EREKRP 117
+ L+ + TP+ V++TGGG+V+ E ++ GT YL E L RL + +RP
Sbjct: 63 -EALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRP 121
Query: 118 LLNNLTQAKEL---FEKRQALYEKNASFIIDA 146
L A+E+ +R+ALY+ A +++DA
Sbjct: 122 TLTGRPIAEEMEAVLREREALYQDVAHYVVDA 153
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
Length = 176
Score = 67.4 bits (163), Expect = 8e-13
Identities = 50/149 (33%), Positives = 76/149 (50%), Gaps = 13/149 (8%)
Query: 5 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLI 64
VL+G GSGKS++ + L AL + +LDTD+ I +R G S+ +IF GE FR E+
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEE--- 62
Query: 65 DELKTLKTPH--VISTGGGIVMHENLKGL---GTTFYLKMDFETLIKRLNQKEREKRPLL 119
D ++ H V+S GGG V ++ T YL++ ++R RPLL
Sbjct: 63 DVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG--GNTVRPLL 120
Query: 120 NNLTQAKE---LFEKRQALYEKNASFIID 145
+A++ L KR LY + A+ +D
Sbjct: 121 AGPDRAEKYRALMAKRAPLYRRVATMRVD 149
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 32.3 bits (72), Expect = 0.027
Identities = 29/115 (25%), Positives = 53/115 (45%), Gaps = 8/115 (6%)
Query: 5 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLI 64
VL+G GSGKS++A E+ L LD D + R + E L +D+ + + + L
Sbjct: 12 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR-NIEKMASGEPLNDDDRKPWLQALN 70
Query: 65 DELKTLKTPHVISTGGGIVMHENLKGL-------GTTFYLKMDFETLIKRLNQKE 112
D ++ + +S + ++ + L + YLK DF+ + RL ++
Sbjct: 71 DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK 125
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 28.5 bits (62), Expect = 0.39
Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 19/101 (18%)
Query: 6 LIGFMGSGKSSLAQELGLALK-------LEVLDTD--------MIISERVGLSVREIFE- 49
L+G GSGK++ A +L L K L DT ++ E+VG+ V E+ +
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 50 ELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKG 90
E E R E+ E + L ++ T G + + E L G
Sbjct: 163 ESPESIRRRVEEKARLEARDL---ILVDTAGRLQIDEPLMG 200
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 28.5 bits (62), Expect = 0.39
Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 19/101 (18%)
Query: 6 LIGFMGSGKSSLAQELGLALK-------LEVLDTD--------MIISERVGLSVREIFE- 49
L+G GSGK++ A +L L K L DT ++ E+VG+ V E+ +
Sbjct: 102 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 161
Query: 50 ELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKG 90
E E R E+ E + L ++ T G + + E L G
Sbjct: 162 ESPESIRRRVEEKARLEARDL---ILVDTAGRLQIDEPLMG 199
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 28.5 bits (62), Expect = 0.39
Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 19/101 (18%)
Query: 6 LIGFMGSGKSSLAQELGLALK-------LEVLDTD--------MIISERVGLSVREIFE- 49
L+G GSGK++ A +L L K L DT ++ E+VG+ V E+ +
Sbjct: 102 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 161
Query: 50 ELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKG 90
E E R E+ E + L ++ T G + + E L G
Sbjct: 162 ESPESIRRRVEEKARLEARDL---ILVDTAGRLQIDEPLMG 199
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 28.5 bits (62), Expect = 0.39
Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 19/101 (18%)
Query: 6 LIGFMGSGKSSLAQELGLALK-------LEVLDTD--------MIISERVGLSVREIFE- 49
L+G GSGK++ A +L L K L DT ++ E+VG+ V E+ +
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 50 ELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKG 90
E E R E+ E + L ++ T G + + E L G
Sbjct: 163 ESPESIRRRVEEKARLEARDL---ILVDTAGRLQIDEPLMG 200
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 28.5 bits (62), Expect = 0.39
Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 19/101 (18%)
Query: 6 LIGFMGSGKSSLAQELGLALK-------LEVLDTD--------MIISERVGLSVREIFE- 49
L+G GSGK++ A +L L K L DT ++ E+VG+ V E+ +
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 50 ELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKG 90
E E R E+ E + L ++ T G + + E L G
Sbjct: 163 ESPESIRRRVEEKARLEARDL---ILVDTAGRLQIDEPLMG 200
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 25.8 bits (55), Expect = 2.5
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 2 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEK 61
+H+ G SG S++ V++ +II G +V EI E+GEDN +F
Sbjct: 712 EHISTAGTEASGTSNMKF---------VMNGGLIIGTVDGANV-EITREIGEDNVFLF-G 760
Query: 62 NLIDELKTLKTPH 74
NL + ++ L+ H
Sbjct: 761 NLSENVEELRYNH 773
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 25.4 bits (54), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 101 FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQA 134
F+ IKRL++ +R+ LL+ L KE+ E QA
Sbjct: 528 FDIQIKRLHEYKRQHLNLLHILALYKEIRENPQA 561
>pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
Length = 796
Score = 25.4 bits (54), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 101 FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQA 134
F+ IKRL++ +R+ LL+ L KE+ E QA
Sbjct: 528 FDIQIKRLHEYKRQHLNLLHILALYKEIRENPQA 561
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 25.4 bits (54), Expect = 3.3
Identities = 9/26 (34%), Positives = 18/26 (68%)
Query: 82 IVMHENLKGLGTTFYLKMDFETLIKR 107
+++ E+LK +G TF+ ++E IK+
Sbjct: 220 LLISEDLKNIGNTFFKSQNWEMAIKK 245
>pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The
Saccharomyces Cerevisiae Ran-Binding Protein Mog1p
Length = 189
Score = 25.0 bits (53), Expect = 4.3
Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 3/37 (8%)
Query: 13 GKSSLAQE--LGLAL-KLEVLDTDMIISERVGLSVRE 46
GK LAQ +G+AL +L DTD++IS V L+ E
Sbjct: 117 GKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEE 153
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 25.0 bits (53), Expect = 4.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 101 FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQA 134
F+ IKRL++ +R+ LL L KE+ E QA
Sbjct: 528 FDIQIKRLHEYKRQHLNLLRILALYKEIRENPQA 561
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
Length = 295
Score = 25.0 bits (53), Expect = 4.3
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 123 TQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQF 160
T+ K+ + +Q L K+ FI++A GL+ + Q F
Sbjct: 3 TKVKKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGF 40
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 25.0 bits (53), Expect = 4.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 101 FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQA 134
F+ IKRL++ +R+ LL L KE+ E QA
Sbjct: 529 FDIQIKRLHEYKRQHLNLLRILALYKEIRENPQA 562
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 24.6 bits (52), Expect = 5.7
Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 4/31 (12%)
Query: 1 MQHLVLIGFMGSGKSSL----AQELGLALKL 27
++HL+L G G GK++L A ELG+ L++
Sbjct: 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 24.6 bits (52), Expect = 5.7
Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 4/31 (12%)
Query: 1 MQHLVLIGFMGSGKSSL----AQELGLALKL 27
++HL+L G G GK++L A ELG+ L++
Sbjct: 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 24.6 bits (52), Expect = 5.7
Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 4/31 (12%)
Query: 1 MQHLVLIGFMGSGKSSL----AQELGLALKL 27
++HL+L G G GK++L A ELG+ L++
Sbjct: 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>pdb|3GRX| Nmr Structure Of Escherichia Coli Glutaredoxin 3-Glutathione Mixed
Disulfide Complex, 20 Structures
Length = 82
Score = 24.3 bits (51), Expect = 7.4
Identities = 14/47 (29%), Positives = 24/47 (50%)
Query: 109 NQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLK 155
N +RE+ + T ++F Q + + + +DARGGL+ LK
Sbjct: 36 NAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 24.3 bits (51), Expect = 7.4
Identities = 14/47 (29%), Positives = 24/47 (50%)
Query: 109 NQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLK 155
N +RE+ + T ++F Q + + + +DARGGL+ LK
Sbjct: 36 NAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escherichia Coli
Complexed With Its Substrate N-Acetylglutamate And Its
Substrate Analog Amppnp
Length = 258
Score = 24.3 bits (51), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 63 LIDELKTLKTPHVISTGGGIVMHENLKGL 91
L++ ++ + P VI GGG V+ E +KGL
Sbjct: 27 LVNYRESHQRPLVIVHGGGCVVDELMKGL 55
>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
pdb|1ZON| Cd11a I-Domain Without Bound Cation
Length = 187
Score = 23.9 bits (50), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (49%)
Query: 90 GLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQ 133
G+G F K ETL K ++ E +L+ + K+LF + Q
Sbjct: 136 GIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQ 179
>pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
pdb|1CQP|B Chain B, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
Length = 182
Score = 23.9 bits (50), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (49%)
Query: 90 GLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQ 133
G+G F K ETL K ++ E +L+ + K+LF + Q
Sbjct: 133 GIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQ 176
>pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
Leukocyte Function Associated Antigen-1
Length = 188
Score = 23.9 bits (50), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (49%)
Query: 90 GLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQ 133
G+G F K ETL K ++ E +L+ + K+LF + Q
Sbjct: 137 GIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQ 180
>pdb|1K3R|A Chain A, Crystal Structure Of The Hypothetical Protein Mt0001 From
Methanobacterium Thermoautotrophicum
pdb|1K3R|B Chain B, Crystal Structure Of The Hypothetical Protein Mt0001 From
Methanobacterium Thermoautotrophicum
Length = 268
Score = 23.9 bits (50), Expect = 9.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 23 LALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMF-------EKNLIDELKTLKTPHV 75
LAL E L + I+S RV +EI E E R + +NL + LKT+ V
Sbjct: 127 LALCREKLTVNRIMSFRVVRLGKEILIEPDEPEDRYWGYEVLDTRRNLAESLKTVGADVV 186
Query: 76 IST 78
++T
Sbjct: 187 VAT 189
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 23.9 bits (50), Expect = 9.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVR-EIFEELG 52
+ L G+M SGK ++A+ L + L + +S +G +VR E+ ELG
Sbjct: 399 IFLTGYMNSGKDAIARALQVTLNQQ---GGRSVSLLLGDTVRHELSSELG 445
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 824,045
Number of Sequences: 13198
Number of extensions: 32011
Number of successful extensions: 128
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 31
length of query: 162
length of database: 2,899,336
effective HSP length: 81
effective length of query: 81
effective length of database: 1,830,298
effective search space: 148254138
effective search space used: 148254138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)