BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646161|ref|NP_208345.1| ribosomal protein S2 (rps2)
[Helicobacter pylori 26695]
(264 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosom... 240 1e-64
pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 3... 240 1e-64
pdb|1IW7|F Chain F, Crystal Structure Of The Rna Polymerase... 30 0.37
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 29 0.64
pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed W... 27 1.9
pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio D... 26 5.4
pdb|1KU2|A Chain A, Crystal Structure Of Thermus Aquaticus ... 26 5.4
pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES... 26 5.4
pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphogluco... 26 5.4
pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Mo... 26 5.4
pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase Holoen... 26 5.4
pdb|1FKX| Murine Adenosine Deaminase (D296a) 25 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Rib... 25 7.0
pdb|1FKW| Murine Adenosine Deaminase (D295e) 25 7.0
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Com... 25 7.0
pdb|1UIO| Adenosine Deaminase (His 238 Ala Mutant) 25 7.0
pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s ... 25 7.0
pdb|1UIP| Adenosine Deaminase (His 238 Glu Mutant) 25 7.0
pdb|2ADA| Adenosine Deaminase (E.C.3.5.4.4) Complexed Wit... 25 7.0
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 255
Score = 240 bits (612), Expect = 1e-64
Identities = 123/251 (49%), Positives = 166/251 (66%), Gaps = 11/251 (4%)
Query: 2 VTMKDLLECGVHFGHQTRRWNPKTKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDASAQ 61
+T+K+LLE GVHFGH+ +RWNPK ++I+ R IHIIDLQKT+ T+ + D + +
Sbjct: 4 ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMR 63
Query: 62 GKSIMFVGTKKQANETLKEFAESIQVPYVNYRWLGGMLTNFSTIRKSVRKLEIIEEMENS 121
G +I+FVGTKKQA + ++ AE +PYVN RWLGGMLTNF TI + V +LE +E + S
Sbjct: 64 GGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFAS 123
Query: 122 GQIDLLTKKEKLMILRKKEKLDKYLGGVRHMKKIPDMIFVIDVAKEKIAVAEARKLHIPI 181
+I+ KKE++ + + E+L KYL G R +K++PD IFV+D KE IAV EARKL IP+
Sbjct: 124 PEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPV 183
Query: 182 VAPLDTNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGR----------ELMQE-EI 230
+A DT+ DPDLVDY IPGNDDAIRSI+L + I++ R L+QE E
Sbjct: 184 IALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEA 243
Query: 231 VHANENSEEIE 241
E E+E
Sbjct: 244 TETPEGESEVE 254
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|B Chain B, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 256
Score = 240 bits (612), Expect = 1e-64
Identities = 123/251 (49%), Positives = 166/251 (66%), Gaps = 11/251 (4%)
Query: 2 VTMKDLLECGVHFGHQTRRWNPKTKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDASAQ 61
+T+K+LLE GVHFGH+ +RWNPK ++I+ R IHIIDLQKT+ T+ + D + +
Sbjct: 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMR 64
Query: 62 GKSIMFVGTKKQANETLKEFAESIQVPYVNYRWLGGMLTNFSTIRKSVRKLEIIEEMENS 121
G +I+FVGTKKQA + ++ AE +PYVN RWLGGMLTNF TI + V +LE +E + S
Sbjct: 65 GGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFAS 124
Query: 122 GQIDLLTKKEKLMILRKKEKLDKYLGGVRHMKKIPDMIFVIDVAKEKIAVAEARKLHIPI 181
+I+ KKE++ + + E+L KYL G R +K++PD IFV+D KE IAV EARKL IP+
Sbjct: 125 PEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPV 184
Query: 182 VAPLDTNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGR----------ELMQE-EI 230
+A DT+ DPDLVDY IPGNDDAIRSI+L + I++ R L+QE E
Sbjct: 185 IALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEA 244
Query: 231 VHANENSEEIE 241
E E+E
Sbjct: 245 TETPEGESEVE 255
>pdb|1IW7|F Chain F, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|P Chain P, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 423
Score = 29.6 bits (65), Expect = 0.37
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 122 GQIDLLTKKEKLMILRKKEKLDKYLGGVRHMKKIPDMI-----FVIDVAKEKIAVAEARK 176
GQ+ LLT +E++ + RK E+ G+ +KK+ ++ + +V + KI + AR
Sbjct: 89 GQVPLLTLEEEVELARKVEE------GMEAIKKLSEITGLDPDLIREVVRAKI-LGSARV 141
Query: 177 LHIPIVAPLDTNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGRELMQEEIVHAN 234
HIP L DP V+ D ++S+ K EG E ++ ++ AN
Sbjct: 142 RHIP---GLKETLDPKTVE----EIDQKLKSLPKEHKRYLHIAREG-EAARQHLIEAN 191
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 28.9 bits (63), Expect = 0.64
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 208 IRLFCKEMSEAILEGRELMQEEIVHANENSEEIEYVSHEEKEEMLAEIQK 257
+RL K EA + R + +E A E EE+E +S +EK+ L +QK
Sbjct: 116 VRLLHKITEEARVRVRNVRRE----AKEMIEELEGISEDEKKRALERLQK 161
>pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp
Length = 422
Score = 27.3 bits (59), Expect = 1.9
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 129 KKEKLMILRKKEKLDKYLGGVRHMKKIPDMIFVIDVAKEKIAVAEARKL--HIPIVAPLD 186
KK + + E KY G+ K PD +F D K+ ++AR L + ++ P
Sbjct: 288 KKLQPTVRNYVENRPKY-AGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAK 346
Query: 187 TNCDPDLVDYPI------PGNDDAIRSIRLFCKEMSE---AILEGRELMQEEIVHANENS 237
D + +P P +A +++ K++ E I E +EL+ +E++++ E +
Sbjct: 347 RISVDDALQHPYINVWYDPAEVEA-PPPQIYDKQLDEREHTIEEWKELIYKEVMNSEEKT 405
Query: 238 E 238
+
Sbjct: 406 K 406
>pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 542
Score = 25.8 bits (55), Expect = 5.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 187 TNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGRELMQEEIVH 232
T C D ++ PIP N IR++ L G + M + +VH
Sbjct: 83 TRCLEDAINKPIPANATYIRNLVL-----------GNQFMHDHLVH 117
>pdb|1KU2|A Chain A, Crystal Structure Of Thermus Aquaticus Rna Polymerase
Sigma Subunit Fragment Containing Regions 1.2 To 3.1
pdb|1KU2|B Chain B, Crystal Structure Of Thermus Aquaticus Rna Polymerase
Sigma Subunit Fragment Containing Regions 1.2 To 3.1
Length = 241
Score = 25.8 bits (55), Expect = 5.4
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 122 GQIDLLTKKEKLMILRKKEKLDKYLGGVRHMKKIP-----DMIFVIDVAKEKIAVAEARK 176
GQ+ LLT +E++ + RK E+ G+ +KK+ D + +V + KI + AR
Sbjct: 13 GQVPLLTLEEEIDLARKVEE------GMEAIKKLSEATGLDQELIREVVRAKI-LGTARI 65
Query: 177 LHIPIVAPLDTNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGRELMQEEIVHAN 234
IP L DP V+ D ++S+ K EG E ++ ++ AN
Sbjct: 66 QKIP---GLKEKPDPKTVEEV----DGKLKSLPKELKRYLHIAREG-EAARQHLIEAN 115
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 25.8 bits (55), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 29 IFGVRKNIHIIDLQKTLRYFRYTY--NIVRDASAQGKSIMFV 68
++G+RKN ++ K R RY Y NI+R S Q FV
Sbjct: 45 LWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFV 86
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
Factor
Length = 557
Score = 25.8 bits (55), Expect = 5.4
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 11 GVHFGHQTRRWNPKTKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDASAQGKSIMFVGT 70
G H + NP++ FI + + + +D SA K + + T
Sbjct: 188 GTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALST 247
Query: 71 KKQANETLKEFAESIQVPYVNYRWLGGMLTNFSTIRKSV 109
+KEF Q + + W+GG + +S I S+
Sbjct: 248 N---TTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSI 283
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Length = 558
Score = 25.8 bits (55), Expect = 5.4
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 11 GVHFGHQTRRWNPKTKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDASAQGKSIMFVGT 70
G H + NP++ FI + + + +D SA K + + T
Sbjct: 189 GTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALST 248
Query: 71 KKQANETLKEFAESIQVPYVNYRWLGGMLTNFSTIRKSV 109
+KEF Q + + W+GG + +S I S+
Sbjct: 249 N---TTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSI 284
>pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 438
Score = 25.8 bits (55), Expect = 5.4
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 122 GQIDLLTKKEKLMILRKKEKLDKYLGGVRHMKKIP-----DMIFVIDVAKEKIAVAEARK 176
GQ+ LLT +E++ + RK E+ G+ +KK+ D + +V + KI + AR
Sbjct: 104 GQVPLLTLEEEIDLARKVEE------GMEAIKKLSEATGLDQELIREVVRAKI-LGTARI 156
Query: 177 LHIPIVAPLDTNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGRELMQEEIVHAN 234
IP L DP V+ D ++S+ K EG E ++ ++ AN
Sbjct: 157 QKIP---GLKEKPDPKTVEEV----DGKLKSLPKELKRYLHIAREG-EAARQHLIEAN 206
>pdb|1FKX| Murine Adenosine Deaminase (D296a)
Length = 349
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 227 QEEIVHANENSEEIEYVSHEEKEEMLAEIQKE 258
+EE N N+ + ++ EEK+E+L + +E
Sbjct: 316 EEEFKRLNINAAKSSFLPEEEKKELLERLYRE 347
>pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD| Adenosine Deaminase (E.C.3.5.4.4) Complexed With 1-Deaza-Adenosine
(Daa)
pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
Length = 349
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 227 QEEIVHANENSEEIEYVSHEEKEEMLAEIQKE 258
+EE N N+ + ++ EEK+E+L + +E
Sbjct: 316 EEEFKRLNINAAKSSFLPEEEKKELLERLYRE 347
>pdb|1FKW| Murine Adenosine Deaminase (D295e)
Length = 349
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 227 QEEIVHANENSEEIEYVSHEEKEEMLAEIQKE 258
+EE N N+ + ++ EEK+E+L + +E
Sbjct: 316 EEEFKRLNINAAKSSFLPEEEKKELLERLYRE 347
>pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 391
Score = 25.4 bits (54), Expect = 7.0
Identities = 9/35 (25%), Positives = 20/35 (56%)
Query: 71 KKQANETLKEFAESIQVPYVNYRWLGGMLTNFSTI 105
++Q + T ++ + + VPY +W G + T+ +I
Sbjct: 59 QRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSI 93
>pdb|1UIO| Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 227 QEEIVHANENSEEIEYVSHEEKEEMLAEIQKE 258
+EE N N+ + ++ EEK+E+L + +E
Sbjct: 316 EEEFKRLNINAAKSSFLPEEEKKELLERLYRE 347
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 25.4 bits (54), Expect = 7.0
Identities = 16/61 (26%), Positives = 36/61 (58%), Gaps = 7/61 (11%)
Query: 202 DDAIRS----IRLFCKEMSEAILEGRELMQEEIVHANENSEEIEYVSHEEKEEMLAEIQK 257
D+AI + I+L K + E + G + ++ ++ +++ ++ ++ EE E+ +AEI+K
Sbjct: 178 DEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAEIEK 234
Query: 258 E 258
E
Sbjct: 235 E 235
>pdb|1UIP| Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 227 QEEIVHANENSEEIEYVSHEEKEEMLAEIQKE 258
+EE N N+ + ++ EEK+E+L + +E
Sbjct: 316 EEEFKRLNINAAKSSFLPEEEKKELLERLYRE 347
>pdb|2ADA| Adenosine Deaminase (E.C.3.5.4.4) Complexed With
6-Hydroxyl-1,6-Dihydropurine Ribonucleoside
Length = 352
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 227 QEEIVHANENSEEIEYVSHEEKEEMLAEIQKE 258
+EE N N+ + ++ EEK+E+L + +E
Sbjct: 319 EEEFKRLNINAAKSSFLPEEEKKELLERLYRE 350
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,438,168
Number of Sequences: 13198
Number of extensions: 56344
Number of successful extensions: 254
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 19
length of query: 264
length of database: 2,899,336
effective HSP length: 86
effective length of query: 178
effective length of database: 1,764,308
effective search space: 314046824
effective search space used: 314046824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)