BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646164|ref|NP_208348.1| flagellar basal-body
protein (fliE) [Helicobacter pylori 26695]
(109 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragm... 28 0.11
pdb|1FLC|B Chain B, X-Ray Structure Of The Haemagglutinin-E... 28 0.19
pdb|1E9I|D Chain D, Enolase From E.Coli >gi|16975437|pdb|1E... 25 0.96
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 25 1.6
pdb|1AVC| Bovine Annexin Vi (Calcium-Bound) 24 2.1
pdb|1SMV|C Chain C, Mol_id: 1; Molecule: Sesbania Mosaic Vi... 24 2.8
pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studie... 24 2.8
pdb|1WKD| Trna-Guanine Transglycosylase 24 2.8
pdb|1WKE| Trna-Guanine Transglycosylase 24 2.8
pdb|1WKF| Trna-Guanine Transglycosylase 24 2.8
pdb|1K4G|A Chain A, Crystal Structure Of Trna-Guanine Trans... 24 2.8
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 23 4.8
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 23 4.8
pdb|1I69|A Chain A, Crystal Structure Of The Reduced Form O... 23 6.2
pdb|1I6A|A Chain A, Crystal Stucture Of The Oxidized Form O... 23 6.2
pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein... 23 6.2
pdb|1LM3|B Chain B, A Multi-Generation Analysis Of Cytochro... 22 8.1
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 0.11
Identities = 13/41 (31%), Positives = 23/41 (55%)
Query: 15 SELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQ 55
+ LN D+ + E GS+ ++Q+ F LL++ + NTQ
Sbjct: 80 TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120
>pdb|1FLC|B Chain B, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|D Chain D, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|F Chain F, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 175
Score = 27.7 bits (60), Expect = 0.19
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 23 TKREESGSTFKE------QKGGEFSKLLKQSIN----ELNNTQEQSDKALADMAT----- 67
+++E G KE +K G ++LK SIN +LN+ ++A+ D+
Sbjct: 28 SRKESGGGVTKESAEKGFEKIGNDIQILKSSINIAIEKLNDRISHDEQAIRDLTLEIENA 87
Query: 68 ---------GQIKDLHQAAIAIGKAETSMKLMLEVRNKA 97
G I+ L I+IG E+ +L E+ N+A
Sbjct: 88 RSEALLGELGIIRALLVGNISIGLQESLWELASEITNRA 126
>pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
Length = 431
Score = 25.4 bits (54), Expect = 0.96
Identities = 13/65 (20%), Positives = 32/65 (49%)
Query: 44 LKQSINELNNTQEQSDKALADMATGQIKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKE 103
L +++ + ++ A+ +G+ +D A +A+G A +K R+ ++ Y +
Sbjct: 348 LTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQ 407
Query: 104 LLRTQ 108
L+R +
Sbjct: 408 LIRIE 412
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 24.6 bits (52), Expect = 1.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 38 GEFSKLLKQSINELNNTQEQSDKALADMATGQIKDLHQAA-IAIGKAETSMKLMLEVRNK 96
G F K+L + L T+E+ D D+ ++DL++A + G E +L R+K
Sbjct: 151 GHFQKML---VVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSK 207
>pdb|1AVC| Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 24.3 bits (51), Expect = 2.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 38 GEFSKLLKQSINELNNTQEQSDKALADMATGQIKDLHQAA-IAIGKAETSMKLMLEVRNK 96
G F K+L + L T+E+ D D+ ++DL++A + G E +L R+K
Sbjct: 152 GHFRKML---VVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSK 208
>pdb|1SMV|C Chain C, Mol_id: 1; Molecule: Sesbania Mosaic Virus Coat Protein;
Chain: A, B, C
pdb|1SMV|B Chain B, Mol_id: 1; Molecule: Sesbania Mosaic Virus Coat Protein;
Chain: A, B, C
pdb|1SMV|A Chain A, Mol_id: 1; Molecule: Sesbania Mosaic Virus Coat Protein;
Chain: A, B, C
Length = 260
Score = 23.9 bits (50), Expect = 2.8
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 44 LKQSINELNNTQEQSDKALADMATGQIKDLHQAAIAIGKAETSMKLMLEVRNKAISA 100
++Q + NT E + A ++ L I A ++ M+ +RN A+S+
Sbjct: 6 IQQLAKAIANTLETPPQPKAGRRRSAVQQLPPIQAGISMAPSAQGAMVRIRNPAVSS 62
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna-Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 DNRTKREESGSTFKEQKGGEFSKLLKQSINEL 51
D+R ++ E+ + F Q+G F L +QS + L
Sbjct: 187 DSRKEQAENAALFGIQQGSVFENLRQQSADAL 218
>pdb|1WKD| Trna-Guanine Transglycosylase
Length = 386
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 DNRTKREESGSTFKEQKGGEFSKLLKQSINEL 51
D+R ++ E+ + F Q+G F L +QS + L
Sbjct: 187 DSRKEQAENAALFGIQQGSVFENLRQQSADAL 218
>pdb|1WKE| Trna-Guanine Transglycosylase
Length = 386
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 DNRTKREESGSTFKEQKGGEFSKLLKQSINEL 51
D+R ++ E+ + F Q+G F L +QS + L
Sbjct: 187 DSRKEQAENAALFGIQQGSVFENLRQQSADAL 218
>pdb|1WKF| Trna-Guanine Transglycosylase
Length = 386
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 DNRTKREESGSTFKEQKGGEFSKLLKQSINEL 51
D+R ++ E+ + F Q+G F L +QS + L
Sbjct: 187 DSRKEQAENAALFGIQQGSVFENLRQQSADAL 218
>pdb|1K4G|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With 2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With 2,6-Diamino-8-Propylsulfanylmethyl-3h-
Quinazoline-4-One
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1PUD| Trna-Guanine Transglycosylase
pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
Length = 386
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 DNRTKREESGSTFKEQKGGEFSKLLKQSINEL 51
D+R ++ E+ + F Q+G F L +QS + L
Sbjct: 187 DSRKEQAENAALFGIQQGSVFENLRQQSADAL 218
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 6 NDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKALADM 65
+D+S+ + D K S ++K +F KL S+ +LN ++ D+ + M
Sbjct: 63 DDQSIQKSVETIKEDMNVKFFNSN----KKKRDDFEKLTNYSVTDLNVQRKAIDELIQVM 118
Query: 66 A 66
A
Sbjct: 119 A 119
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 6 NDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKALADM 65
+D+S+ + D K S ++K +F KL S+ +LN ++ D+ + M
Sbjct: 63 DDQSIQKSVETIKEDMNVKFFNSN----KKKRDDFEKLTNYSVTDLNVQRKAIDELIQVM 118
Query: 66 A 66
A
Sbjct: 119 A 119
>pdb|1I69|A Chain A, Crystal Structure Of The Reduced Form Of Oxyr
pdb|1I69|B Chain B, Crystal Structure Of The Reduced Form Of Oxyr
Length = 219
Score = 22.7 bits (47), Expect = 6.2
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 22 RTKREESGSTFKEQKGGEFSKLLKQSI 48
R++ E+ + + G F K+LKQ++
Sbjct: 193 RSRYEQLAEAIRARMDGHFDKVLKQAV 219
>pdb|1I6A|A Chain A, Crystal Stucture Of The Oxidized Form Of Oxyr
Length = 219
Score = 22.7 bits (47), Expect = 6.2
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 22 RTKREESGSTFKEQKGGEFSKLLKQSI 48
R++ E+ + + G F K+LKQ++
Sbjct: 193 RSRYEQLAEAIRARMDGHFDKVLKQAV 219
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 22.7 bits (47), Expect = 6.2
Identities = 24/102 (23%), Positives = 39/102 (37%), Gaps = 9/102 (8%)
Query: 9 SLLSPFSEL---NTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKALADM 65
S L F EL N N KRE+ KGG F L + N +
Sbjct: 304 SSLLRFYELIGKNLQNEEKREKLEKVLSNHKGGNFG--LPLNFNAFKEWASEYGVEFKTN 361
Query: 66 ATGQIKDLHQAAIAIGKAET----SMKLMLEVRNKAISAYKE 103
+ I ++ I++G+ T S +++++ K A K+
Sbjct: 362 GSQTIAIINDERISLGQWHTRNRVSKAVLVKMLRKLYEATKD 403
>pdb|1LM3|B Chain B, A Multi-Generation Analysis Of Cytochrome B562 Redox
Variants: Evolutionary Strategies For Modulating Redox
Potential Revealed Using A Library Approach
pdb|1LM3|D Chain D, A Multi-Generation Analysis Of Cytochrome B562 Redox
Variants: Evolutionary Strategies For Modulating Redox
Potential Revealed Using A Library Approach
Length = 106
Score = 22.3 bits (46), Expect = 8.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 69 QIKDL-HQAAIAIGKAETSMKLMLEVRNKAISAYKELLRT 107
++KD+ H I +G+ + ++KL E + K A E L+T
Sbjct: 57 EMKDIRHGYDILVGQIDDALKLANEGKVKEAQAAAEQLKT 96
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.123 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,524
Number of Sequences: 13198
Number of extensions: 17162
Number of successful extensions: 47
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 17
length of query: 109
length of database: 2,899,336
effective HSP length: 85
effective length of query: 24
effective length of database: 1,777,506
effective search space: 42660144
effective search space used: 42660144
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)