BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15646165|ref|NP_208349.1| flagellar basal-body rod protein (flgC) (proximal rod protein) [Helicobacter pylori 26695] (161 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FOT|A  Chain A, Structure Of The Unliganded Camp-Depend...    28  0.39
pdb|1EVQ|A  Chain A, The Crystal Structure Of The Thermophil...    25  5.6
pdb|1GGJ|A  Chain A, Crystal Structure Of Catalase Hpii From...    24  7.3
pdb|1GGH|A  Chain A, Crystal Structure Of Catalase Hpii From...    24  7.3
pdb|1GG9|A  Chain A, Crystal Structure Of Catalase Hpii From...    24  7.3
pdb|1GGE|A  Chain A, Crystal Structure Of Catalase Hpii From...    24  7.3
pdb|1GGK|A  Chain A, Crystal Structure Of Catalase Hpii From...    24  7.3
pdb|1CF9|A  Chain A, Structure Of The Mutant Val169cys Of Ca...    24  7.3
pdb|1QF7|A  Chain A, Structure Of The Mutant His392gln Of Ca...    24  7.3

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
           Catalytic Subunit From Saccharomyces Cerevisiae
          Length = 318

 Score = 28.5 bits (62), Expect = 0.39
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 7/36 (19%)

Query: 53  FNEILNQKIAQNNQITPYEDPLDEG-------DEYP 81
           F E++ +K+   N  TPYE P+ +G       D+YP
Sbjct: 262 FKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYP 297

>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
           Est2 From Alicyclobacillus Acidocaldarius
          Length = 310

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)

Query: 100 PLMKYDPSHPDA----NAQGYV 117
           P   YDP+HP A    NA+GY+
Sbjct: 184 PSTGYDPAHPPASIEENAEGYL 205

>pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201ala Variant.
 pdb|1GGJ|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201ala Variant.
 pdb|1GGJ|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201ala Variant.
 pdb|1GGJ|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201ala Variant
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

>pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128ala Variant.
 pdb|1GGH|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128ala Variant.
 pdb|1GGH|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128ala Variant.
 pdb|1GGH|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128ala Variant
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

>pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128asn Variant.
 pdb|1GG9|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128asn Variant.
 pdb|1GG9|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128asn Variant.
 pdb|1GG9|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           His128asn Variant.
 pdb|1GGF|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Variant His128asn, Complex With Hydrogen Peroxide.
 pdb|1GGF|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Variant His128asn, Complex With Hydrogen Peroxide.
 pdb|1GGF|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Variant His128asn, Complex With Hydrogen Peroxide.
 pdb|1GGF|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Variant His128asn, Complex With Hydrogen Peroxide
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

>pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Native Structure At 1.9 A Resolution.
 pdb|1GGE|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Native Structure At 1.9 A Resolution.
 pdb|1GGE|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Native Structure At 1.9 A Resolution.
 pdb|1GGE|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Native Structure At 1.9 A Resolution.
 pdb|1IPH|A Chain A, Structure Of Catalase Hpii From Escherichia Coli
 pdb|1IPH|B Chain B, Structure Of Catalase Hpii From Escherichia Coli
 pdb|1IPH|C Chain C, Structure Of Catalase Hpii From Escherichia Coli
 pdb|1IPH|D Chain D, Structure Of Catalase Hpii From Escherichia Coli
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

>pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201his Variant.
 pdb|1GGK|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201his Variant.
 pdb|1GGK|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201his Variant.
 pdb|1GGK|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
           Asn201his Variant
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

>pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Catalase Hpii From
           Escherichia Coli
 pdb|1CF9|B Chain B, Structure Of The Mutant Val169cys Of Catalase Hpii From
           Escherichia Coli
 pdb|1CF9|C Chain C, Structure Of The Mutant Val169cys Of Catalase Hpii From
           Escherichia Coli
 pdb|1CF9|D Chain D, Structure Of The Mutant Val169cys Of Catalase Hpii From
           Escherichia Coli
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

>pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Catalase Hpii From E.
           Coli
 pdb|1QF7|B Chain B, Structure Of The Mutant His392gln Of Catalase Hpii From E.
           Coli
 pdb|1QF7|C Chain C, Structure Of The Mutant His392gln Of Catalase Hpii From E.
           Coli
 pdb|1QF7|D Chain D, Structure Of The Mutant His392gln Of Catalase Hpii From E.
           Coli
          Length = 753

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 12/101 (11%)

Query: 40  PYRRQEAVFKAFDFNEILNQKIAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSE 99
           PY R+  V +    +  L Q +A+N  I   +D L+      + P   V  + + +D S 
Sbjct: 537 PYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLN------ITPPPDV--NGLKKDPSL 588

Query: 100 PLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
            L       PD + +G V    +N  V  ADL+   +A +A
Sbjct: 589 SLYAI----PDGDVKGRVVAILLNDEVRSADLLAILKALKA 625

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 874,456
Number of Sequences: 13198
Number of extensions: 34369
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 9
length of query: 161
length of database: 2,899,336
effective HSP length: 81
effective length of query: 80
effective length of database: 1,830,298
effective search space: 146423840
effective search space used: 146423840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)