BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646170|ref|NP_208354.1| alkyl hydroperoxide
reductase (tsaA) [Helicobacter pylori 26695]
(198 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood... 179 1e-46
pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys ... 167 7e-43
pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia ... 163 1e-41
pdb|1KYG|A Chain A, X-Ray Crystal Structure Of Ahpc >gi|201... 94 1e-20
pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme >... 69 4e-13
pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Te... 27 2.1
pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Pr... 27 2.1
pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Doma... 27 2.1
pdb|1JW3|A Chain A, Solution Structure Of Methanobacterium ... 26 3.5
pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn... 25 6.0
pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome... 25 7.8
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 179 bits (455), Expect = 1e-46
Identities = 92/194 (47%), Positives = 127/194 (65%), Gaps = 4/194 (2%)
Query: 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKD 62
+ K APDFKA AV+ + +LS GK +LFF+P DFTFV PTEIIAF R +D
Sbjct: 7 IGKPAPDFKATAVVDG--AFKEVKLSDYKGKY-VVLFFYPLDFTFVXPTEIIAFSNRAED 63
Query: 63 FQEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVL-FEEAI 121
F++ G V+GVS+DS+ H AW NTP ++GG+G + P++AD+T+ +S DY VL +E I
Sbjct: 64 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGI 123
Query: 122 ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMK 181
A RG F+ID +R +NDLP+GR+ DE LR+V A + +EHGEVCPAGW+ G +K
Sbjct: 124 AYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIK 183
Query: 182 ATHQGVAEYLKENS 195
EY +++
Sbjct: 184 PNVDDSKEYFSKHN 197
>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23.
pdb|1QQ2|B Chain B, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23
Length = 199
Score = 167 bits (423), Expect = 7e-43
Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 3/188 (1%)
Query: 7 APDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEK 66
AP FKA AV+ + + + LS GK + FF+P DFTFVCPTEIIAF R ++F++
Sbjct: 12 APSFKATAVMPDGQFKD-ISLSDYKGKY-VVFFFYPLDFTFVCPTEIIAFSDRAEEFKKL 69
Query: 67 GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVL-FEEAIALRG 125
VIG S+DS H AW NTP ++GG+G + P+V+D ++I++DY VL +E I+ RG
Sbjct: 70 NCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRG 129
Query: 126 AFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQ 185
F+ID +R INDLP+GR+ DE+LR+V A ++HGEVCPAGW+ G +K
Sbjct: 130 LFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVN 189
Query: 186 GVAEYLKE 193
EY +
Sbjct: 190 KSKEYFSK 197
>pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|B Chain B, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|C Chain C, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|I Chain I, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|H Chain H, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|D Chain D, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|J Chain J, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|E Chain E, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|F Chain F, Tryparedoxin Peroxidase From Crithidia Fasciculata
Length = 188
Score = 163 bits (413), Expect = 1e-41
Identities = 87/179 (48%), Positives = 111/179 (61%), Gaps = 3/179 (1%)
Query: 7 APDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEK 66
AP+F A+ N + LS GK +LFF+P DFTFVCPTEII F K F E
Sbjct: 12 APEFDDXALXPNGTFKK-VSLSSYKGKY-VVLFFYPXDFTFVCPTEIIQFSDDAKRFAEI 69
Query: 67 GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVLFEEA-IALRG 125
VI S DSE H W + +KGG+G P +AD TK+I+R Y VL E++ +A RG
Sbjct: 70 NTEVISCSCDSEYSHLQWTSVDRKKGGLGPXAIPXLADKTKAIARAYGVLDEDSGVAYRG 129
Query: 126 AFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATH 184
F+ID N K+R +IND P+GRN +E++R+V+AL EEHGEVCPA W+KGD K H
Sbjct: 130 VFIIDPNGKLRQIIINDXPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKGDAKKKEGH 188
>pdb|1KYG|A Chain A, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|D Chain D, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|B Chain B, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|E Chain E, X-Ray Crystal Structure Of Ahpc
pdb|1KYG|C Chain C, X-Ray Crystal Structure Of Ahpc
Length = 186
Score = 93.6 bits (231), Expect = 1e-20
Identities = 59/179 (32%), Positives = 99/179 (54%), Gaps = 9/179 (5%)
Query: 1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRV 60
++ TK+ P FK A N E E E K+ ++ FF+P DFTFVCPTE+
Sbjct: 2 LINTKIKP-FKNQA-FKNGEFIEVTE--KDTEGRWSVFFFYPADFTFVCPTELGDVADHY 57
Query: 61 KDFQEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVLFE-E 119
++ Q+ G +V VS D+ H AW ++ I ++ + M+ D T +++R++D + E E
Sbjct: 58 EELQKLGVDVYSVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDE 114
Query: 120 AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCPAGWRKGD 177
+A R F++D ++ + +GR+A ++LR + A + H GEVCPA W++G+
Sbjct: 115 GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGE 173
>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme
pdb|1PRX|B Chain B, Horf6 A Novel Human Peroxidase Enzyme
Length = 224
Score = 68.9 bits (167), Expect = 4e-13
Identities = 51/190 (26%), Positives = 88/190 (45%), Gaps = 16/190 (8%)
Query: 1 MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRV 60
+L+ +AP+F+A +G + LG + ILF P+DFT V TE+ K
Sbjct: 5 LLLGDVAPNFEANTTVGRIRFHDF------LGDSWGILFSHPRDFTPVXTTELGRAAKLA 58
Query: 61 KDFQEKGFNVIGVSIDSEQVHFAWK---NTPVEKGGIGQVTFPMVADITKSISRDYDVLF 117
+F ++ +I +SIDS + H AW N + ++ FP++ D + ++ +L
Sbjct: 59 PEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLD 118
Query: 118 EE-------AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
+ R F+ + K++ +++ GRN DE+LR+V +L E P
Sbjct: 119 PAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATP 178
Query: 171 AGWRKGDKGM 180
W+ GD M
Sbjct: 179 VDWKDGDSVM 188
>pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24 Kda
Fragment Of Dna Gyrase B Complexed With Novobiocin At
2.3 Angstroms Resolution
Length = 219
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 33 KNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSI------DSEQVHFAWK 85
K G ++ FWP TF TE ++ K +E F GVSI D ++ HF ++
Sbjct: 161 KTGTMVRFWPSLETFTNVTE-FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 218
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
Length = 391
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 33 KNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSI------DSEQVHFAWK 85
K G ++ FWP TF TE ++ K +E F GVSI D ++ HF ++
Sbjct: 161 KTGTMVRFWPSLETFTNVTE-FEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYE 218
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
Clorobiocin
Length = 205
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 33 KNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSI------DSEQVHFAWK 85
K G ++ FWP TF TE ++ K +E F GVSI D ++ HF ++
Sbjct: 148 KTGTMVRFWPSLETFTNVTE-FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 205
>pdb|1JW3|A Chain A, Solution Structure Of Methanobacterium Thermoautotrophicum
Protein 1598
Length = 140
Score = 25.8 bits (55), Expect = 3.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 36 AILFFWPKDFTFVCPTEIIAFDK-RVK-DFQEKGFNVIGVSIDSE 78
++L+ W + F+ TE I F K +VK D ++ G ++ G ++ E
Sbjct: 60 SLLYDWLDELLFIHDTEFILFSKFKVKIDEKDDGLHLTGTAMGEE 104
>pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn2+
pdb|1JIX|A Chain A, T4 Phage Bgt In Complex With Ca2+
pdb|1JG6|A Chain A, T4 Phage Bgt In Complex With Udp
pdb|1JIV|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form Ii
pdb|1QKJ|A Chain A, T4 Phage B-Glucosyltransferase, Substrate Binding And
Proposed Catalytic Mechanism
pdb|1JIU|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form I
pdb|1JEJ|A Chain A, T4 Phage Apo Bgt
pdb|1C3J|A Chain A, T4 Phage Beta-Glucosyltransferase: Substrate Binding And
Proposed Catalytic Mechanism
pdb|2BGT| Mol_id: 1; Molecule: Beta-Glucosyltransferase; Chain: Null; Ec:
2.4.1.27
pdb|2BGU| Mol_id: 1; Molecule: Beta-Glucosyltransferase; Chain: Null; Ec:
2.4.1.27
pdb|1BGT| Beta-Glucosyltransferase (E.C.2.4.1.27) (Alpha-Carbons)
pdb|1BGU| Beta-Glucosyltransferase (E.C.2.4.1.27) (Alpha-Carbons)
Length = 351
Score = 25.0 bits (53), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (46%), Gaps = 1/44 (2%)
Query: 119 EAIALRGAFLIDKNMKVRHAVINDLPL-GRNADEMLRMVDALLH 161
E +A LID+ +H +IND N E++ V+ L H
Sbjct: 272 ETMASDAVMLIDEEFDTKHRIINDARFYVNNRAELIDRVNELKH 315
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 250
Score = 24.6 bits (52), Expect = 7.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 75 IDSEQVHFAWKNTPVEKGGIGQVTF 99
+D +F WK T + KG + TF
Sbjct: 150 VDPSGSYFPWKATAIGKGSVAAKTF 174
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,209,226
Number of Sequences: 13198
Number of extensions: 50560
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 11
length of query: 198
length of database: 2,899,336
effective HSP length: 84
effective length of query: 114
effective length of database: 1,790,704
effective search space: 204140256
effective search space used: 204140256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)