BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644787|ref|NP_206957.1| hypothetical protein
[Helicobacter pylori 26695]
         (318 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EHK|A  Chain A, Crystal Structure Of The Aberrant Ba3-C...    26  5.3
pdb|1CFM|A  Chain A, Cytochrome F From Chlamydomonas Reinhar...    26  6.9
pdb|1E2V|A  Chain A, N153q Mutant Of Cytochrome F From Chlam...    26  6.9
pdb|1E2W|A  Chain A, N168f Mutant Of Cytochrome F From Chlam...    26  6.9
pdb|1E2Z|A  Chain A, Q158l Mutant Of Cytochrome F From Chlam...    26  6.9

>pdb|1EHK|A Chain A, Crystal Structure Of The Aberrant Ba3-Cytochrome-C Oxidase
           From Thermus Thermophilus
          Length = 562

 Score = 26.2 bits (56), Expect = 5.3
 Identities = 15/49 (30%), Positives = 25/49 (50%)

Query: 258 FLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLISLAIYV 306
           F+G ++ AL + A      ++   P K  +A YL   V VL   ++IY+
Sbjct: 114 FIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYI 162



 Score = 26.2 bits (56), Expect = 5.3
 Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 8/69 (11%)

Query: 258 FLGSIIIALAIEALMLVF----KFSVSEPDKITYA----VYLAVGVAVLLISLAIYVKFA 309
           FLG +I+A+ +    L+      +    PD   +A    V+  +   VLL++L +++   
Sbjct: 429 FLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGL 488

Query: 310 YSVLPKRER 318
           +SVL  RER
Sbjct: 489 FSVLLSRER 497



>pdb|1CFM|A Chain A, Cytochrome F From Chlamydomonas Reinhardtii
 pdb|1CFM|B Chain B, Cytochrome F From Chlamydomonas Reinhardtii
 pdb|1CFM|C Chain C, Cytochrome F From Chlamydomonas Reinhardtii
 pdb|1EWH|A Chain A, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
 pdb|1EWH|B Chain B, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
 pdb|1EWH|C Chain C, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
          Length = 251

 Score = 25.8 bits (55), Expect = 6.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 87  LTEGIEL--------ESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYD 138
           L EG EL        E      + YY   +  +K  ++  P P KK + +VV    P   
Sbjct: 77  LPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPA 136

Query: 139 QNNDLAFV 146
           +N +++++
Sbjct: 137 KNKNVSYL 144



>pdb|1E2V|A Chain A, N153q Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
 pdb|1E2V|B Chain B, N153q Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
 pdb|1E2V|C Chain C, N153q Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
          Length = 251

 Score = 25.8 bits (55), Expect = 6.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 87  LTEGIEL--------ESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYD 138
           L EG EL        E      + YY   +  +K  ++  P P KK + +VV    P   
Sbjct: 77  LPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPA 136

Query: 139 QNNDLAFV 146
           +N +++++
Sbjct: 137 KNKNVSYL 144



>pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
 pdb|1E2W|B Chain B, N168f Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
          Length = 251

 Score = 25.8 bits (55), Expect = 6.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 87  LTEGIEL--------ESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYD 138
           L EG EL        E      + YY   +  +K  ++  P P KK + +VV    P   
Sbjct: 77  LPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPA 136

Query: 139 QNNDLAFV 146
           +N +++++
Sbjct: 137 KNKNVSYL 144



>pdb|1E2Z|A Chain A, Q158l Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
 pdb|1E2Z|B Chain B, Q158l Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
 pdb|1E2Z|C Chain C, Q158l Mutant Of Cytochrome F From Chlamydomonas
           Reinhardtii
          Length = 251

 Score = 25.8 bits (55), Expect = 6.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 87  LTEGIEL--------ESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYD 138
           L EG EL        E      + YY   +  +K  ++  P P KK + +VV    P   
Sbjct: 77  LPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPA 136

Query: 139 QNNDLAFV 146
           +N +++++
Sbjct: 137 KNKNVSYL 144



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.140    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,631,630
Number of Sequences: 13198
Number of extensions: 61674
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 6
length of query: 318
length of database: 2,899,336
effective HSP length: 88
effective length of query: 230
effective length of database: 1,737,912
effective search space: 399719760
effective search space used: 399719760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)