BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646173|ref|NP_208357.1| hypothetical protein
[Helicobacter pylori 26695]
(147 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1YST|L Chain L, Photosynthetic Reaction Center (Wild Type) 25 4.7
pdb|1PSS|L Chain L, Photosynthetic Reaction Center (Wild-Ty... 25 4.7
pdb|1FNP|L Chain L, Crystal Structure Analysis Of The Mutan... 25 4.7
pdb|1FNQ|L Chain L, Crystal Structure Analysis Of The Mutan... 25 4.7
pdb|1F6N|L Chain L, Crystal Structure Analysis Of The Mutan... 25 4.7
pdb|1JH0|L Chain L, Photosynthetic Reaction Center Mutant W... 25 4.7
pdb|1L9B|L Chain L, X-Ray Structure Of The Cytochrome-C(2)-... 25 4.7
pdb|1K6N|L Chain L, E(L212)a,D(L213)a Double Mutant Structu... 25 4.7
>pdb|1YST|L Chain L, Photosynthetic Reaction Center (Wild Type)
Length = 273
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
>pdb|1PSS|L Chain L, Photosynthetic Reaction Center (Wild-Type)
pdb|1PST|L Chain L, Photosynthetic Reaction Center Mutant With His M 202
Replaced With Leu (H(M 202)l)
Length = 266
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 155 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 193
>pdb|1FNP|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Phe From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
>pdb|1FNQ|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Glu From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
>pdb|1F6N|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Tyr From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
>pdb|1JH0|L Chain L, Photosynthetic Reaction Center Mutant With Glu L 205
Replaced To Leu
Length = 281
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
>pdb|1L9B|L Chain L, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co-Crystals
pdb|1L9J|L Chain L, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co-Crystals
pdb|1L9J|R Chain R, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co-Crystals
pdb|1K6L|L Chain L, Photosynethetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1M3X|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1QOV|L Chain L, Photosynthetic Reaction Center Mutant With Ala M260
Replaced With Trp (Chain M, A260w)
pdb|1AIJ|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1AIJ|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1E6D|L Chain L, Photosynthetic Reaction Center Mutant With Trp M115
Replaced With Phe (Chain M, Wm115f) Phe M197 Replaced
With Arg (Chain M, Fm197r)
pdb|1DS8|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DS8|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DV6|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV6|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV3|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb- State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV3|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb- State With
The Proton Transfer Inhibitor Cd2+
pdb|1MPS|L Chain L, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
pdb|1AIG|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb- Charge Separated State
pdb|1AIG|N Chain N, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb- Charge Separated State
pdb|1PCR|L Chain L, Photosynthetic Reaction Center
pdb|1E14|L Chain L, Photosynthetic Reaction Center Mutant With Phe M197
Replaced With Arg (Chain M, Fm197r) And Gly M203
Replaced With Asp (Chain M, Gm203d)
pdb|1JGY|L Chain L, Photosynthetic Reaction Center Mutant With Tyr M 76
Replaced With Phe
pdb|1JGZ|L Chain L, Photosynthetic Reaction Center Mutant With Tyr M 76
Replaced With Lys
pdb|1JGW|L Chain L, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Leu
pdb|1JGX|L Chain L, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Asp
pdb|2RCR|L Chain L, Photosynthetic Reaction Center From (Rhodobacter
sphaeroides)
pdb|4RCR|L Chain L, Photosynthetic Reaction Center
Length = 281
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
>pdb|1K6N|L Chain L, E(L212)a,D(L213)a Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 281
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 94 NDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFA 132
N G+ + H + + +S FF+ +L+L + G L L A
Sbjct: 159 NTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSA 197
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.338 0.153 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,250
Number of Sequences: 13198
Number of extensions: 26352
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 8
length of query: 147
length of database: 2,899,336
effective HSP length: 80
effective length of query: 67
effective length of database: 1,843,496
effective search space: 123514232
effective search space used: 123514232
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.9 bits)