BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646174|ref|NP_208358.1| conserved hypothetical
GTP-binding protein [Helicobacter pylori 26695]
(208 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 32 0.041
pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 C... 26 2.9
pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex 26 2.9
pdb|1914| Signal Recognition Particle Alu Rna Binding Het... 25 5.0
pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carbo... 25 6.5
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 32.3 bits (72), Expect = 0.041
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 27 MVVLGRSNVGKSSFINTLLGKNLAKSSATPGKTR 60
+ ++GR NVGKS+ +N LLG+ ++ +S TR
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 26.2 bits (56), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 23 LTSEMVVLGRSNVGKSSFINTLLGKNLAKSSAT 55
L S VV+G N+ +N++ KNL+ + T
Sbjct: 175 LNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGT 207
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
Length = 431
Score = 26.2 bits (56), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 23 LTSEMVVLGRSNVGKSSFINTLLGKNLAKSSAT 55
L S VV+G N+ +N++ KNL+ + T
Sbjct: 176 LNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGT 208
>pdb|1914| Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914
Length = 232
Score = 25.4 bits (54), Expect = 5.0
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 1 MIVIKDAHFLTSSSQLFQCPASLTSEMVVL----GRSN--VGKSSFINTLLGKNLAKSSA 54
M++++ FLT ++LFQ S S + L GR+ KSS +N A
Sbjct: 20 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 79
Query: 55 TPGKTRLANFFSTTWEDK-----ENALRATFN 81
T GK +++ S+ +K N LRA +
Sbjct: 80 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMD 111
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4-Piperidino-Piperidine
Length = 534
Score = 25.0 bits (53), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 126 HLDLEIDKNAKENIQALLRPDQAYLSLFTKFD 157
H+ E+ N KENI D YL+++T D
Sbjct: 73 HMLSELFTNRKENIPLKFSEDCLYLNIYTPAD 104
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,099,051
Number of Sequences: 13198
Number of extensions: 40970
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 5
length of query: 208
length of database: 2,899,336
effective HSP length: 84
effective length of query: 124
effective length of database: 1,790,704
effective search space: 222047296
effective search space used: 222047296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)