BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646177|ref|NP_208361.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(164 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K1E|A Chain A, Structure Of The Cobalt-Bound Form Of T... 120 1e-28
pdb|1J8D|A Chain A, Structure Of The Metal-Free Form Of The... 119 2e-28
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phos... 47 8e-07
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 47 8e-07
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoser... 45 4e-06
pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phos... 45 4e-06
pdb|1AJS|A Chain A, Refinement And Comparison Of The Crysta... 31 0.062
pdb|1AJS|B Chain B, Refinement And Comparison Of The Crysta... 31 0.062
pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli ... 29 0.31
pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant >... 26 2.6
pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W... 26 2.6
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 26 2.6
pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With... 26 2.6
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From... 26 2.6
pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 26 2.6
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+ >gi... 26 2.6
pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 26 2.6
pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t)... 26 2.6
pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro... 26 2.6
pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant... 25 3.4
pdb|1YOO| Aspartate Aminotransferase Mutant Atb17 With Is... 25 3.4
pdb|2AAT| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 25 3.4
pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site ... 25 3.4
pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A D... 25 3.4
pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutan... 25 3.4
pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escheri... 25 3.4
pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escheri... 25 3.4
pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site ... 25 3.4
pdb|1ASF| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 25 3.4
pdb|1ARS| Aspartate Aminotransferase (E.C.2.6.1.1) Comple... 25 3.4
pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A ... 25 3.4
pdb|1AIA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1... 25 3.4
pdb|1ART| Aspartate Aminotransferase (E.C.2.6.1.1) Comple... 25 3.4
pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site ... 25 3.4
pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site ... 25 3.4
pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escheri... 25 3.4
pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17... 25 3.4
pdb|1AAM| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 25 3.4
pdb|1SPA| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 25 3.4
pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site ... 25 3.4
pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli... 25 3.4
pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site ... 25 3.4
pdb|3AAT| Aspartate Aminotransferase (E.C.2.6.1.1) (Mutan... 25 3.4
pdb|2CST|A Chain A, Aspartate Aminotransferase (Caspat) (E.... 25 4.5
pdb|1AAT| Cytosolic Aspartate Aminotransferase (E.C.2.6.1... 25 4.5
pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase T... 25 4.5
pdb|1EE8|A Chain A, Crystal Structure Of Mutm (Fpg) Protein... 25 5.8
pdb|1A1S| Ornithine Carbamoyltransferase From Pyrococcus ... 25 5.8
pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From... 25 5.8
pdb|1FE8|C Chain C, Crystal Structure Of The Von Willebrand... 24 9.9
>pdb|1K1E|A Chain A, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|B Chain B, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|E Chain E, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|F Chain F, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|I Chain I, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|J Chain J, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|C Chain C, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|K Chain K, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|H Chain H, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|D Chain D, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|G Chain G, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|L Chain L, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
Length = 180
Score = 120 bits (300), Expect = 1e-28
Identities = 62/153 (40%), Positives = 93/153 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK ++ DVDG LTDG L++D N IK+F+V+DGLG+ + ++A+++GR S ++++
Sbjct: 8 IKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRR 67
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R+ LG++ F+G K T L K ++A++ A +GDD DL F AC SFA DA
Sbjct: 68 RIADLGIKLFFLGKLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADA 127
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEG 154
+K+ VL GGKGA RE D +L +G
Sbjct: 128 PIYVKNAVDHVLSTHGGKGAFREMSDMILQAQG 160
>pdb|1J8D|A Chain A, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1J8D|B Chain B, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1J8D|C Chain C, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1J8D|D Chain D, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
Length = 180
Score = 119 bits (297), Expect = 2e-28
Identities = 62/153 (40%), Positives = 92/153 (59%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK ++ DVDG LTDG L++D N IK+F+V+DGLG+ ++A+++GR S ++++
Sbjct: 8 IKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKXLXDADIQVAVLSGRDSPILRR 67
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R+ LG++ F+G K T L K ++A++ A +GDD DL F AC SFA DA
Sbjct: 68 RIADLGIKLFFLGKLEKETACFDLXKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADA 127
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEG 154
+K+ VL GGKGA RE D +L +G
Sbjct: 128 PIYVKNAVDHVLSTHGGKGAFREXSDXILQAQG 160
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 47.4 bits (111), Expect = 8e-07
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ MFK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISMFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 47.4 bits (111), Expect = 8e-07
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ MFK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISMFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 45.1 bits (105), Expect = 4e-06
Identities = 35/124 (28%), Positives = 56/124 (44%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ FK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISXFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 45.1 bits (105), Expect = 4e-06
Identities = 35/124 (28%), Positives = 56/124 (44%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ FK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISXFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 31.2 bits (69), Expect = 0.062
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 81 VIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKG 140
V +R+ + L+ + + +G L F+ CA A D P L+ K +Q+ GG G
Sbjct: 56 VEQRIANNSSLNHEYLPILG-----LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG 110
Query: 141 AVREAIDYL 149
A+R ++L
Sbjct: 111 ALRIGAEFL 119
>pdb|1AJS|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 31.2 bits (69), Expect = 0.062
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 81 VIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKG 140
V +R+ + L+ + + +G L F+ CA A D P L+ K +Q+ GG G
Sbjct: 56 VEQRIANNSSLNHEYLPILG-----LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG 110
Query: 141 AVREAIDYL 149
A+R ++L
Sbjct: 111 ALRIGAEFL 119
>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|B Chain B, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|C Chain C, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|D Chain D, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|E Chain E, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|F Chain F, Tyrosine Aminotransferase From E. Coli
Length = 397
Score = 28.9 bits (63), Expect = 0.31
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYL 149
HP+LK + +Q GG GA++ D+L
Sbjct: 88 HPVLKQQRVATIQTLGGSGALKVGADFL 115
>pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHX|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHF|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHF|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHE|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHE|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHY|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHG|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHG|B Chain B, Aspartate Aminotransferase Hexamutant
Length = 396
Score = 25.8 bits (55), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGSGALRVAADFL 114
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
Tryptophan Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240
>pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1QOP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
Length = 396
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87 ->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 204 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 241
>pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylsulfinyl)-Butylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-Butylphosphonic Acid
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-1-Butenylphosphonic Acid
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxy-4-Fluorophenylthio)-Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Aminophenylthio)-Butylphosphonic Acid
Length = 397
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 204 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 241
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Length = 396
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240
>pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
Length = 397
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 204 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 241
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 204 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 241
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 72 FMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMF 109
F + + T + L K+ +L IACVG N +GMF
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240
>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant
pdb|1BQA|B Chain B, Aspartate Aminotransferase P195a Mutant
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1YOO| Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|2AAT| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant K258a Complex With
Pyridoxamine Phosphate (PMP)
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
pdb|1BQD|B Chain B, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
pdb|1ARI|B Chain B, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f
Mutation, With Bound Maleate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y
Mutation, With Bound Maleate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant
N194aR292LR386L
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1ASF| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Tyr 226
Replaced By Phe (Y226f) And Complexed With
Pyridoxal-5'-Phosphate And Sulfate
pdb|1ASG| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Tyr 226
Replaced By Phe (Y226f) And Complexed With
Pyridoxal-5'-Phosphate And Maleate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1ARS| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxal-5'-Phosphate
pdb|1AMR| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxamine 5'-Phosphate And Maleate
pdb|1ARG|A Chain A, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ARG|B Chain B, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ASD| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complexed With
N-Methyl-Pyridoxal-5'-Phosphate And Maleate
pdb|1AMQ| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxamine 5'-Phosphate
pdb|1ASM|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Maleate
pdb|1ASM|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Maleate
pdb|1ASA| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complexed With
Pyridoxal-5'-Phosphate And Maleate
pdb|1AAW| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complex With
Pyridoxal-5'-Phosphate
pdb|1C9C|A Chain A, Aspartate Aminotransferase Complexed With C3-Pyridoxal-5'-
Phosphate
pdb|1CQ7|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C5- Pyridoxal-5p-Phosphate
pdb|1CQ8|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C6- Pyridoxal-5p-Phosphate
pdb|1ASN|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Sulfate
pdb|1ASN|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Sulfate
pdb|1ASE| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complexed With
Pyridoxal-5'-Phosphate-N-Oxide And Maleate
pdb|1ASL|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type)
Complex With 2-Methylaspartyl-Pyridoxal-5'-Phosphate
pdb|1ASL|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type)
Complex With 2-Methylaspartyl-Pyridoxal-5'-Phosphate
pdb|1AMS| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxamine 5'-Phosphate And Glutarate
pdb|1CQ6|A Chain A, Aspartate Aminotransferase Complex With C4-Pyridoxal-5p-
Phosphate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT
pdb|1ARH|B Chain B, Aspartate Aminotransferase, Y225rR386A MUTANT
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1AIA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Holo Form)
Mutant With Lys 258 Replaced By His (K258h) Complexed
With Pyridoxamine-5'-Phosphate
pdb|1AIA|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Holo Form)
Mutant With Lys 258 Replaced By His (K258h) Complexed
With Pyridoxamine-5'-Phosphate
pdb|1AIC|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And Sulfate
pdb|1AIC|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And Sulfate
pdb|1AIB|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And 2-Oxo-Glutarate
pdb|1AIB|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And 2-Oxo-Glutarate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1ART| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxal-5'-Phosphate And 2-Methylaspartate
Length = 398
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w
Mutation, With Bound Maleate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
Succinic Acid
pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
Glutaric Acid
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1AAM| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Arg 292
Replaced By Asp (R292d) Complex With
Pyridoxal-5'-Phosphate And Sulfate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1SPA| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Asp 222
Replaced By Ala (D222a) Reconstructed With
N(1)-Methylated Pyridoxal-5'-Phosphate
pdb|1ASC| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Asp 223
Replaced By Ala (D223a) And Complexed With
N-Methyl-Pyridoxal-5'-Phosphate
pdb|1ASB| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Asp 223
Replaced By Ala (D223a) And Complexed With
Pyridoxal-5'-Phosphate And Maleate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aY225F
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation
pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation,
With Bound Maleate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f
pdb|1IX7|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Maleate
Complex
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|3AAT| Aspartate Aminotransferase (E.C.2.6.1.1) (Mutant With Arg 386
Replaced By Phe) (R386F) Complex With
Pyridoxal-5'-Phosphate And Sulfate
Length = 396
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 124 LLKSKAYKVLQNSGGKGAVREAIDYL 149
L+ K + Q GG GA+R A D+L
Sbjct: 89 LINDKRARTAQTPGGTGALRVAADFL 114
>pdb|2CST|A Chain A, Aspartate Aminotransferase (Caspat) (E.C.2.6.1.1)
Complexed With Pyridoxal-5'-Phosphate And Maleate
pdb|2CST|B Chain B, Aspartate Aminotransferase (Caspat) (E.C.2.6.1.1)
Complexed With Pyridoxal-5'-Phosphate And Maleate
Length = 411
Score = 25.0 bits (53), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 109 FKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREAIDYL 149
F+A A A D P + K +Q GG GA+R ++L
Sbjct: 78 FRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFL 118
>pdb|1AAT| Cytosolic Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
2-Oxo-Glutaric Acid
Length = 411
Score = 25.0 bits (53), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 109 FKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREAIDYL 149
F+A A A D P + K +Q GG GA+R ++L
Sbjct: 78 FRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFL 118
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 25.0 bits (53), Expect = 4.5
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 69 QFVFMGVENKNTVIERLKKDLQLSAQ 94
Q + +G E+K +E+LK+D++ AQ
Sbjct: 248 QKLHVGEESKKNFLEKLKRDVEFLAQ 273
>pdb|1EE8|A Chain A, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
pdb|1EE8|B Chain B, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
Length = 266
Score = 24.6 bits (52), Expect = 5.8
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 57 IMVKKRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSF 116
++++ E L F F G R K L L + A VG+ Y D +F+A F
Sbjct: 117 LLLRLGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPF 176
Query: 117 APFDAHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEG--LQDEALK 161
P A L + +A ++ + A+RE + + L G L D++ +
Sbjct: 177 RP--ARSLTEEEARRLYR------ALREVLAEAVELGGSTLSDQSYR 215
>pdb|1A1S| Ornithine Carbamoyltransferase From Pyrococcus Furiosus
Length = 314
Score = 24.6 bits (52), Expect = 5.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 40 LWQKLGKKIAIITGRTSIMV 59
+WQK+GK ++ G+T M+
Sbjct: 32 IWQKIGKPHRLLEGKTLAMI 51
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 24.6 bits (52), Expect = 5.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 59 VKKRMESLGVQFVFMGVENKNTVIERL 85
+KKR E LGV+F+ +G E I+R+
Sbjct: 219 LKKRSEKLGVKFI-LGREGSEPKIQRM 244
>pdb|1FE8|C Chain C, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|A Chain A, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|B Chain B, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
Length = 196
Score = 23.9 bits (50), Expect = 9.9
Identities = 14/38 (36%), Positives = 21/38 (54%)
Query: 5 LLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQ 42
++L +DG+ + + YFDE KAF K +G L Q
Sbjct: 14 VILLLDGSSSFPASYFDEXKSFAKAFISKANIGPRLTQ 51
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 934,116
Number of Sequences: 13198
Number of extensions: 36961
Number of successful extensions: 107
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 51
length of query: 164
length of database: 2,899,336
effective HSP length: 81
effective length of query: 83
effective length of database: 1,830,298
effective search space: 151914734
effective search space used: 151914734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)