BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646181|ref|NP_208365.1| riboflavin synthase alpha
subunit (ribC) [Helicobacter pylori 26695]
         (206 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I8D|A  Chain A, Crystal Structure Of Riboflavin Synthas...    94  1e-20
pdb|1KZL|A  Chain A, Riboflavin Synthase From S.Pombe Bound ...    93  2e-20
pdb|1HZE|A  Chain A, Solution Structure Of The N-Terminal Do...    43  2e-05
pdb|1H6Q|A  Chain A, Translationally Controlled Tumor-Associ...    25  8.4

>pdb|1I8D|A Chain A, Crystal Structure Of Riboflavin Synthase
 pdb|1I8D|B Chain B, Crystal Structure Of Riboflavin Synthase
 pdb|1I8D|C Chain C, Crystal Structure Of Riboflavin Synthase
          Length = 213

 Score = 93.6 bits (231), Expect = 1e-20
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 11/204 (5%)

Query: 1   MFSGLIHQIAKVKS------FHNNILNIESDLNPKL--GDSIAINGACLTAIESSKTHFS 52
           MF+G++   AK+ S      F  +++ +   +   L  G S+A NG CLT  E +  H S
Sbjct: 1   MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query: 53  VELSQKTQNSVALENYK--DLVHIEPALKADASLDGHFVQGHIDAIGVIEKIIHNANQVD 110
            +L ++T     L + K  D V++E A K    + GH + GHI     + KI+ + N   
Sbjct: 61  FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ 120

Query: 111 FFISASEETLLLCV-EQGSIAVDGVSLTLSKVEEKGFWLTIIPYTLENTLFKAYKLKRRV 169
            +    +  L+  +  +G I +DG+SLT+ +V    F + +IP TLE T     KL  RV
Sbjct: 121 IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV 180

Query: 170 NIETDMLVRSVASILKKTKGFEKN 193
           NIE D   ++V   +++     +N
Sbjct: 181 NIEIDPQTQAVVDTVERVLAAREN 204



>pdb|1KZL|A Chain A, Riboflavin Synthase From S.Pombe Bound To
           Carboxyethyllumazine
          Length = 208

 Score = 93.2 bits (230), Expect = 2e-20
 Identities = 64/207 (30%), Positives = 104/207 (49%), Gaps = 19/207 (9%)

Query: 1   MFSGLIHQIAKVKSFHNNILN-----IESDL---NPKLGDSIAINGACLTAIESSKTHFS 52
           MF+GL+  I  VK     I N     IE+     +   GDSIA+NG CLT  +  + HF+
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFT 60

Query: 53  VELSQKTQNSVALENYK--DLVHIEPALKADASLDGHFVQGHIDAIGVIEKIIHNANQVD 110
           V ++ ++     L   K  D V++E A+ +   + GHFVQGH+D +  I +   +   +D
Sbjct: 61  VGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAID 120

Query: 111 FFISASEETLL-LCVEQGSIAVDGVSLTLSKVEEKGFWLTIIPYTLENTLFKAYKLKRRV 169
           F     +  +L   V +G IA+DG SLT++ V++  F + +I YT    +     +   V
Sbjct: 121 FTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGDLV 180

Query: 170 NIETDMLVR--------SVASILKKTK 188
           N+E D + +         +A  +KKT+
Sbjct: 181 NVEVDQIGKYTEKLVEAHIADWIKKTQ 207



>pdb|1HZE|A Chain A, Solution Structure Of The N-Terminal Domain Of
          Riboflavin Synthase From E. Coli
 pdb|1HZE|B Chain B, Solution Structure Of The N-Terminal Domain Of
          Riboflavin Synthase From E. Coli
 pdb|1I18|A Chain A, Solution Structure Of The N-Terminal Domain Of
          Riboflavin Synthase From E. Coli
 pdb|1I18|B Chain B, Solution Structure Of The N-Terminal Domain Of
          Riboflavin Synthase From E. Coli
          Length = 97

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 30/97 (30%), Positives = 48/97 (48%), Gaps = 10/97 (10%)

Query: 1  MFSGLIHQIAKVKS------FHNNILNIESDLNPKL--GDSIAINGACLTAIESSKTHFS 52
          MF+G++   AK+ S      F  +++ +   +   L  G S+A NG CLT  E +  H S
Sbjct: 1  MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query: 53 VELSQKTQNSVALENYK--DLVHIEPALKADASLDGH 87
           +L ++T     L + K  D V++E A K    + GH
Sbjct: 61 FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGH 97



>pdb|1H6Q|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
           From Schizosaccharomyces Pombe
 pdb|1H7Y|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
           From Schizosaccharomyces Pombe
          Length = 168

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (64%)

Query: 94  DAIGVIEKIIHNANQVDFFISAS 116
           +AIG ++KI+ N    DF+I  S
Sbjct: 113 NAIGFVKKILANFKDYDFYIGES 135



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,059,054
Number of Sequences: 13198
Number of extensions: 36075
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 4
length of query: 206
length of database: 2,899,336
effective HSP length: 84
effective length of query: 122
effective length of database: 1,790,704
effective search space: 218465888
effective search space used: 218465888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)