BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646182|ref|NP_208366.1| ABC transporter, putative
[Helicobacter pylori 26695]
(90 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TC2|B Chain B, Ternary Substrate Complex Of The Hypoxa... 25 1.4
pdb|1I14|A Chain A, Analysis Of An Invariant Aspartic Acid ... 25 1.4
pdb|1I13|A Chain A, Analysis Of An Invariant Aspartic Acid ... 25 1.4
pdb|1TC1|B Chain B, A 1.4 Angstrom Crystal Structure For Th... 25 1.4
pdb|1I0I|A Chain A, Analysis Of An Invariant Aspartic Acid ... 25 1.4
pdb|1I0L|A Chain A, Analysis Of An Invariant Aspartic Acid ... 25 1.4
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 25 1.9
pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein... 24 3.2
pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Pl... 24 3.2
pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv... 23 4.2
pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif 23 4.2
pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mu... 23 5.4
pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase... 23 7.1
pdb|2PII| Pii, Glnb Product >gi|1127243|pdb|1PIL| Signal... 23 7.1
>pdb|1TC2|B Chain B, Ternary Substrate Complex Of The Hypoxanthine
Phosphoribosyltransferase From Trypanosoma Cruzi
pdb|1TC2|A Chain A, Ternary Substrate Complex Of The Hypoxanthine
Phosphoribosyltransferase From Trypanosoma Cruzi
Length = 221
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 23 IASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
I + + EVAKRI K + + NP+++ S+LK
Sbjct: 18 IRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLK 52
>pdb|1I14|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamic
Acid Mutant
pdb|1I14|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamic
Acid Mutant
Length = 221
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 23 IASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
I + + EVAKRI K + + NP+++ S+LK
Sbjct: 18 IRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLK 52
>pdb|1I13|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Alanine
Mutant
pdb|1I13|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Alanine
Mutant
Length = 221
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 23 IASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
I + + EVAKRI K + + NP+++ S+LK
Sbjct: 18 IRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLK 52
>pdb|1TC1|B Chain B, A 1.4 Angstrom Crystal Structure For The Hypoxanthine
Phosphoribosyltransferase Of Trypanosoma Cruzi
pdb|1TC1|A Chain A, A 1.4 Angstrom Crystal Structure For The Hypoxanthine
Phosphoribosyltransferase Of Trypanosoma Cruzi
Length = 220
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 23 IASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
I + + EVAKRI K + + NP+++ S+LK
Sbjct: 17 IRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLK 51
>pdb|1I0I|A Chain A, Analysis Of An Invariant Aspartic Acid In
Hprts-Glutamine Mutant
pdb|1I0I|B Chain B, Analysis Of An Invariant Aspartic Acid In
Hprts-Glutamine Mutant
Length = 221
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 23 IASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
I + + EVAKRI K + + NP+++ S+LK
Sbjct: 18 IRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLK 52
>pdb|1I0L|A Chain A, Analysis Of An Invariant Aspartic Acid In
Hprts-Asparagine Mutant
pdb|1I0L|B Chain B, Analysis Of An Invariant Aspartic Acid In
Hprts-Asparagine Mutant
Length = 221
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 23 IASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
I + + EVAKRI K + + NP+++ S+LK
Sbjct: 18 IRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLK 52
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 24.6 bits (52), Expect = 1.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGE 29
+ KT+ L +N+ Q+H + +GVGE
Sbjct: 162 VGKTVLIQELIHNIAQEHGGISVFAGVGE 190
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 23.9 bits (50), Expect = 3.2
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 4/75 (5%)
Query: 6 KAAALAYNMG----QDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVELD 61
K A L++ G + H +G V KR+I+ Y AL + + L K +D
Sbjct: 236 KNAVLSFIAGLFDAEGHVSNKPGIELGMVNKRLIEDVTHYLNALGIKARIREKLRKDGID 295
Query: 62 CAIPEELYESVVQVF 76
+ E Y S+++ +
Sbjct: 296 YVLHVEEYSSLLRFY 310
>pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium
Falciparum With Ten Subunits Per Asymmetric Unit Reveal
Critical Characteristics Of The Active Site For Drug
Design
Length = 183
Score = 23.9 bits (50), Expect = 3.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 7/38 (18%)
Query: 30 VAKRII------QKAKEYDIALFSNPMLVD-SLLKVEL 60
++KRII +K KE + +F NP +V+ SL+K++L
Sbjct: 52 ISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKL 89
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 23.5 bits (49), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 19 APKVIASGVGEVAKRIIQKAKEYD-IALFSNPMLVDSL 55
A K + V E KR++ K +EYD I +F N + + L
Sbjct: 288 AYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRL 325
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
Length = 152
Score = 23.5 bits (49), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 19 APKVIASGVGEVAKRIIQKAKEYD-IALFSNPMLVDSL 55
A K + V E KR++ K +EYD I +F N + + L
Sbjct: 92 AYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRL 129
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 23.1 bits (48), Expect = 5.4
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 15 GQDHAPKVIASGVGEVAKRIIQKAKEYDI 43
G K++ + GE+A RI++ KE I
Sbjct: 1 GSHMLDKIVIANRGEIALRILRACKELGI 29
>pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B;
Ec: 6.3.4.14
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B;
Ec: 6.3.4.14
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
Length = 449
Score = 22.7 bits (47), Expect = 7.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 21 KVIASGVGEVAKRIIQKAKEYDI 43
K++ + GE+A RI++ KE I
Sbjct: 4 KIVIANRGEIALRILRACKELGI 26
>pdb|2PII| Pii, Glnb Product
pdb|1PIL| Signal Transducing Protein P2 (Product Of Glnb)
Length = 112
Score = 22.7 bits (47), Expect = 7.1
Identities = 7/27 (25%), Positives = 18/27 (65%)
Query: 51 LVDSLLKVELDCAIPEELYESVVQVFL 77
+VD L KV+++ +P+++ ++ V +
Sbjct: 52 MVDFLPKVKIEIVVPDDIVDTCVDTII 78
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,423
Number of Sequences: 13198
Number of extensions: 13436
Number of successful extensions: 36
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 14
length of query: 90
length of database: 2,899,336
effective HSP length: 66
effective length of query: 24
effective length of database: 2,028,268
effective search space: 48678432
effective search space used: 48678432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)