BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646183|ref|NP_208367.1| ABC transporter,
ATP-binding protein (abc) [Helicobacter pylori 26695]
(327 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 159 4e-40
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 155 6e-39
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 152 7e-38
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 131 1e-31
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 98 1e-21
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 93 5e-20
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 85 1e-17
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 84 2e-17
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 84 2e-17
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 52 7e-08
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 30 0.29
pdb|1QOR|A Chain A, Quinone Oxidoreductase Complexed With N... 29 0.84
pdb|1EA9|C Chain C, Cyclomaltodextrinase >gi|21730148|pdb|1... 27 2.5
pdb|3SOD|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.... 27 3.2
pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod ... 27 3.2
pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Compl... 27 3.2
pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3 27 3.2
pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domai... 27 3.2
pdb|1CB4|B Chain B, Crystal Structure Of Copper, Zinc Super... 27 3.2
pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3 27 3.2
pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod -... 27 3.2
pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod -... 27 3.2
pdb|2SOD|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.... 27 3.2
pdb|1SXA|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu... 27 3.2
pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen P... 27 4.2
pdb|1BMD|A Chain A, Malate Dehydrogenase (E.C.1.1.1.37) (Ba... 26 5.5
pdb|1BDM|B Chain B, Malate Dehydrogenase (E.C.1.1.1.37) Mut... 26 5.5
pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta >gi|18158625|p... 26 5.5
pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogena... 26 5.5
pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) F... 26 5.5
pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protei... 26 5.5
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 26 7.1
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase >... 26 7.1
pdb|1M0S|A Chain A, Northeast Structural Genomics Consortiu... 25 9.3
pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearot... 25 9.3
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crysta... 25 9.3
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 159 bits (402), Expect = 4e-40
Identities = 89/237 (37%), Positives = 144/237 (60%), Gaps = 13/237 (5%)
Query: 15 GFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLKLKPK- 73
G LKGV+L+ + GD++ +IG SG+GKST +R IN LE+PS G ++VNG N+ ++ K
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 74 ---------ELQKARQKIGMIFQHFNLLSAKNVFENVAFA-LEIARWEKNKIKSRVHELL 123
+L+ R ++ M+FQHFNL S V ENV A +++ K+ + R + L
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 124 ELVGLEDKMH-FYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILTLLS 182
VG++++ YP LSGGQ+QRV+IAR+LA PD+LL DE TSALD + +L ++
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197
Query: 183 GIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEIFANPKHAVTKELL 239
+ ++ ++V +THE+ + + + + + G+I E G E++F NP+ ++ L
Sbjct: 198 QLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 253
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 155 bits (392), Expect = 6e-39
Identities = 87/224 (38%), Positives = 137/224 (60%), Gaps = 9/224 (4%)
Query: 2 VVELKNIEKIYENG---FHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSG 58
+++LKN+ K Y+ G +ALK VNL +K+G+ + ++G SG+GKST++ +I CL++P+ G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 59 EVLVNGVNLLKLKPKELQKARQ-KIGMIFQHFNLLSAKNVFENVAFALEI---ARWEKNK 114
EV ++ + L EL K R+ KIG +FQ FNL+ ENV L +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 115 IKSRVHELLELVGLEDKM-HFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKT 173
+ R E L++ LE++ + P QLSGGQ+QRVAIAR+LAN P ++L D+ T ALDSKT
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 174 THSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEI 217
I+ LL + ++ ++V +TH+I V + ++ + GE+
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 152 bits (383), Expect = 7e-38
Identities = 88/223 (39%), Positives = 132/223 (58%), Gaps = 9/223 (4%)
Query: 3 VELKNIEKIYENG---FHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGE 59
++LKN+ K Y+ G +ALK VNL +K+G+ + + G SG+GKST + +I CL++P+ GE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 60 VLVNGVNLLKLKPKELQKARQ-KIGMIFQHFNLLSAKNVFENVAFALEI---ARWEKNKI 115
V ++ + L EL K R+ KIG +FQ FNL+ ENV L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 116 KSRVHELLELVGLEDKM-HFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTT 174
+ R E L+ LE++ + P QLSGGQ+QRVAIAR+LAN P ++L DE T ALDSKT
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 175 HSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEI 217
I LL + ++ ++V +TH+I V + ++ + GE+
Sbjct: 182 EKIXQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEV 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 131 bits (329), Expect = 1e-31
Identities = 72/241 (29%), Positives = 142/241 (58%), Gaps = 6/241 (2%)
Query: 3 VELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLV 62
V L ++ K++ A++ ++LE+K G+ + ++G SG GK+T +R+I LE PS G++ +
Sbjct: 4 VRLVDVWKVFGE-VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 63 NGVNLLKLKPKE---LQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKNKIKSRV 119
+ L P++ + + I M+FQ + L V++N+AF L++ + + +I RV
Sbjct: 63 G--DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 120 HELLELVGLEDKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILT 179
E+ EL+GL + ++ P++LSGGQ+QRVA+ R++ P + L DE S LD+K +
Sbjct: 121 REVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 180 LLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEIFANPKHAVTKELL 239
L +Q++L ++ +++TH+ + +++ V++ G + + GS +E++ P + +
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240
Query: 240 G 240
G
Sbjct: 241 G 241
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 98.2 bits (243), Expect = 1e-21
Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 16/232 (6%)
Query: 3 VELKNIEKIYEN-GFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVL 61
VE +N+ Y AL+ +NL++ G + ++G SG+GKST+ LI GE+L
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 62 VNGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKNKIK--SRV 119
++G +L + L R ++ ++ Q+ +L + V N+A+A ++ + +I+ +R+
Sbjct: 402 MDGHDL---REYTLASLRNQVALVSQNVHLFN-DTVANNIAYA-RTEQYSREQIEEAARM 456
Query: 120 HELLELV-----GLEDKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTT 174
++ + GL+ + LSGGQ+QR+AIAR+L +L+ DEATSALD+++
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 175 HSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEI 226
+I L +QK + + + I H + + E +++ V+ G IVERG+ ++
Sbjct: 517 RAIQAALDELQK--NRTSLVIAHRLSTI-EKADEIVVVEDGVIVERGTHNDL 565
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 92.8 bits (229), Expect = 5e-20
Identities = 64/233 (27%), Positives = 125/233 (53%), Gaps = 13/233 (5%)
Query: 2 VVELKNIEKIYEN--GFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGE 59
+V+ +++ Y N L+G+ L+ G++ ++G +G+GKST+ L+ L +P+ G+
Sbjct: 14 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 60 VLVNGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFALE----IARWEKNKI 115
+L++G L + + + L + +G Q F +++ EN+A+ L + +
Sbjct: 74 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG----RSLQENIAYGLTQKPTMEEITAAAV 129
Query: 116 KSRVHELLELV--GLEDKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKT 173
KS H + + G + ++ QLSGGQ+Q VA+AR+L P +L+ D+ATSALD+ +
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 174 THSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEI 226
+ LL ++ S++ IT + +V E + + + G I E G+ +++
Sbjct: 190 QLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIREGGTHQQL 241
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 85.1 bits (209), Expect = 1e-17
Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 23/244 (9%)
Query: 2 VVELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVL 61
++ +NI K Y F AL GV++ + KGD+ +IG +G+GKSTLI +I + G V
Sbjct: 7 ILRTENIVK-YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 62 VNGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAF-----------ALEIARW 110
++ +P EL I FQ L V EN+ +L +W
Sbjct: 66 FENKDITNKEPAELY--HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW 123
Query: 111 --EKNKIKSRVHELLELVGLEDKMHFYPK---QLSGGQKQRVAIARSLANCPDLLLCDEA 165
++ ++ + ++LE + L H Y + +LSGGQ + V I R+L P +++ DE
Sbjct: 124 IPKEEEMVEKAFKILEFLKLS---HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Query: 166 TSALDSKTTHSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEE 225
+ + H I + ++ K ++ + I H +++V + + V+ +G+I+ G EE
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Query: 226 IFAN 229
N
Sbjct: 240 EIKN 243
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 84.3 bits (207), Expect = 2e-17
Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%)
Query: 1 MVVELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEV 60
+V+E++++ +Y HA+KG++L++ +G I+ +IG +GAGK+T + I L R G++
Sbjct: 5 IVLEVQSLH-VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 61 LVNGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKNKIKSRVH 120
+ NG ++ KP + R I ++ + + V+EN+ R +K IK +
Sbjct: 64 IFNGQDITN-KPAHVIN-RXGIALVPEGRRIFPELTVYENLXXG-AYNRKDKEGIKRDLE 120
Query: 121 ELLELV-GLEDKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILT 179
+ L L++++ LSGG++Q +AI R+L + P LL DE + L +
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFE 180
Query: 180 LLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEIFANPKHAVTKELL 239
++ I ++ +I+ + ++ + V+ +G+IV G E+ N V K L
Sbjct: 181 VIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN--EXVRKAYL 237
Query: 240 GI 241
G+
Sbjct: 238 GV 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 84.0 bits (206), Expect = 2e-17
Identities = 65/244 (26%), Positives = 116/244 (46%), Gaps = 23/244 (9%)
Query: 2 VVELKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVL 61
++ +NI K Y F AL GV++ + KGD+ +IG +G+GKSTLI +I + G V
Sbjct: 7 ILRTENIVK-YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 62 VNGVNLLKLKPKELQKARQKIGMIFQHFNLLSAKNVFENVAF-----------ALEIARW 110
++ +P EL I FQ L V EN+ +L +W
Sbjct: 66 FENKDITNKEPAELY--HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKW 123
Query: 111 --EKNKIKSRVHELLELVGLEDKMHFYPK---QLSGGQKQRVAIARSLANCPDLLLCDEA 165
++ ++ + ++LE + L H Y + +LSGGQ + V I R+L P +++ D+
Sbjct: 124 IPKEEEMVEKAFKILEFLKLS---HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
Query: 166 TSALDSKTTHSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEE 225
+ + H I + ++ K ++ + I H +++V + + V+ +G+I+ G EE
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Query: 226 IFAN 229
N
Sbjct: 240 EIKN 243
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 52.4 bits (124), Expect = 7e-08
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 25 ELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLKLKPKELQKARQKIGM 84
E++ G+IL ++G +GAGKSTL+ +G G +P E A K+ +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLAR-------XAGXTSGKGSIQFAGQPLEAWSAT-KLAL 73
Query: 85 IFQHFNLLSAKNVFENVAFALEIARWEKNKIKSRVHELLELVGLEDKMHFYPKQLSGGQK 144
+ + V L + + +K + + ++++ + L+DK+ QLSGG+
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEW 132
Query: 145 QRVAIARSLAN-------CPDLLLCDEATSALDSKTTHSILTLLSGIQKKLDLSIVFITH 197
QRV +A + LLL DE ++LD ++ +LS + ++ L+IV +H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ-GLAIVXSSH 191
Query: 198 EIEVVKELCNQMCVISSGEIVERGSVEEIFANPKHA 233
++ ++ ++ G+ + G EE+ P A
Sbjct: 192 DLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLA 227
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 30.4 bits (67), Expect = 0.29
Identities = 24/86 (27%), Positives = 41/86 (46%), Gaps = 3/86 (3%)
Query: 22 VNLELKKGDILGVIGYSGAGKSTLI-RLINCLERPSSGEVLVNGVNLLKLKPKELQ--KA 78
+N+E K ++ ++G +G GK+T I +L E+ +L G ++LQ
Sbjct: 86 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ 145
Query: 79 RQKIGMIFQHFNLLSAKNVFENVAFA 104
R I +I QH SA +F+ + A
Sbjct: 146 RNNIPVIAQHTGADSASVIFDAIQAA 171
>pdb|1QOR|A Chain A, Quinone Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Quinone Oxidoreductase Complexed With Nadph
Length = 327
Score = 28.9 bits (63), Expect = 0.84
Identities = 34/104 (32%), Positives = 47/104 (44%), Gaps = 18/104 (17%)
Query: 37 YSGAGKSTLIRLINCLER--------PSSGEVLVNGVNLLKLKPK-ELQKARQKI-GMIF 86
Y G+ T R ++CL+R SSG V GVNL L K L R + G I
Sbjct: 214 YDSVGRDTWERSLDCLQRRGLMVSFGNSSG--AVTGVNLGILNQKGSLYVTRPSLQGYIT 271
Query: 87 QHFNLLSAKN-VFENVA---FALEIARWEKNKIK--SRVHELLE 124
L A N +F +A +++A +K +K R HE+LE
Sbjct: 272 TREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILE 315
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 132 MHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILTLLSGIQKKLDLS 191
+ F+ Q++ +K + + LA P + + LDS T +LT G ++K+ L+
Sbjct: 381 LDFFIHQIADAEKFSFMLGKQLAGYPRQA-SEVMFNLLDSHDTARLLTQADGDKRKMKLA 439
Query: 192 IVF 194
++F
Sbjct: 440 VLF 442
>pdb|3SOD|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Mutant With Cys
6 Replaced By Ala (C6a)
Length = 152
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 12 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 66
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3
Of 3)
Length = 151
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 11 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 65
>pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
Length = 289
Score = 26.9 bits (58), Expect = 3.2
Identities = 42/195 (21%), Positives = 73/195 (36%), Gaps = 31/195 (15%)
Query: 16 FHALKGVN---LELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLKLKP 72
F G+N L + G+++ V SG GKST +R + G + V L L+
Sbjct: 29 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVR----QQALQWGTAMGKKVGLAMLEE 84
Query: 73 KELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKNKIKSRVHELLELVGLEDKM 132
+ A IG + L + ++ + + +W EL G D
Sbjct: 85 SVEETAEDLIG-LHNRVRLRQSDSLKREIIENGKFDQW-----------FDELFG-NDTF 131
Query: 133 HFYPKQLSGGQKQ---RVAIARSLANCPDLLLCDEATSAL-------DSKTTHSILTLLS 182
H Y + ++A RS C D+++ D + + + K +++T L
Sbjct: 132 HLYDSFAEAETDRLLAKLAYMRSGLGC-DVIILDHISIVVSASGESDERKMIDNLMTKLK 190
Query: 183 GIQKKLDLSIVFITH 197
G K + +V I H
Sbjct: 191 GFAKSTGVVLVVICH 205
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3
Length = 152
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 12 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 66
>pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
Length = 296
Score = 26.9 bits (58), Expect = 3.2
Identities = 42/195 (21%), Positives = 73/195 (36%), Gaps = 31/195 (15%)
Query: 16 FHALKGVN---LELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLKLKP 72
F G+N L + G+++ V SG GKST +R + G + V L L+
Sbjct: 19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVR----QQALQWGTAMGKKVGLAMLEE 74
Query: 73 KELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKNKIKSRVHELLELVGLEDKM 132
+ A IG + L + ++ + + +W EL G D
Sbjct: 75 SVEETAEDLIG-LHNRVRLRQSDSLKREIIENGKFDQW-----------FDELFG-NDTF 121
Query: 133 HFYPKQLSGGQKQ---RVAIARSLANCPDLLLCDEATSAL-------DSKTTHSILTLLS 182
H Y + ++A RS C D+++ D + + + K +++T L
Sbjct: 122 HLYDSFAEAETDRLLAKLAYMRSGLGC-DVIILDHISIVVSASGESDERKMIDNLMTKLK 180
Query: 183 GIQKKLDLSIVFITH 197
G K + +V I H
Sbjct: 181 GFAKSTGVVLVVICH 195
>pdb|1CB4|B Chain B, Crystal Structure Of Copper, Zinc Superoxide Dismutase
pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase
Length = 151
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 11 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 65
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3
Length = 152
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 12 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 66
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod - (1 Of 3)
Length = 151
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 11 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 65
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod - (1 Of 3)
Length = 151
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 11 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 65
>pdb|2SOD|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|2SOD|G Chain G, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|2SOD|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|2SOD|Y Chain Y, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SDA|B Chain B, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At Tyr
108
pdb|1SDA|G Chain G, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At Tyr
108
pdb|1SDA|O Chain O, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At Tyr
108
pdb|1SDA|Y Chain Y, Cu,Zn Superoxide Dismutase (E.C.1.15.1.1) Nitrated At Tyr
108
Length = 152
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 12 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 66
>pdb|1SXA|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXA|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXC|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXC|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1COB|A Chain A, Superoxide Dismutase (Co Substituted) (E.C.1.15.1.1)
pdb|1COB|B Chain B, Superoxide Dismutase (Co Substituted) (E.C.1.15.1.1)
pdb|1SXB|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1SXB|B Chain B, Superoxide Dismutase (E.C.1.15.1.1) (Cu Reduced To 1+)
pdb|1CBJ|B Chain B, Crystal Structure Of Bovine Superoxide Dismutase Crystal.
pdb|1CBJ|A Chain A, Crystal Structure Of Bovine Superoxide Dismutase Crystal.
pdb|1SXZ|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Azide
pdb|1SXN|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0
pdb|1SXS|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Thiocyanate
pdb|1SXZ|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Azide
pdb|1SXS|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Thiocyanate
pdb|1SXN|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0
Length = 151
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 264 DEPIISNLIKRFKIDVSIISGNIEELTTKDIGYLVVRFLGNTAETQRALEYLNAL 318
D P+ + K D +++G+I LT D G+ V +F NT A + N L
Sbjct: 11 DGPVQGTIHFEAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPL 65
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 26.6 bits (57), Expect = 4.2
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 46 IRLINCLERPSSGEVLVNGV----NLLKLKPKELQK-ARQKIGMIFQHFNLLSAKNVFEN 100
IRL++ +++ + G ++N L ++ K + + RQ++ + + L+ KN+ +N
Sbjct: 576 IRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKN 635
Query: 101 VAFALEIARWEKNKI 115
A E+AR K+
Sbjct: 636 GASIEEVARKYPRKV 650
>pdb|1BMD|A Chain A, Malate Dehydrogenase (E.C.1.1.1.37) (Bacterial) Complexed
With Nadh
pdb|1BMD|B Chain B, Malate Dehydrogenase (E.C.1.1.1.37) (Bacterial) Complexed
With Nadh
Length = 327
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 286 IEELTTKDIGYLVVRFLGNTAETQRALEYLNALGL 320
+ E+ KD+ LVV GN A T + Y NA GL
Sbjct: 116 LAEVAKKDVKVLVV---GNPANTNALIAYKNAPGL 147
>pdb|1BDM|B Chain B, Malate Dehydrogenase (E.C.1.1.1.37) Mutant With Thr 189
Replaced By Ile (T189i) Complexed With Beta-6-Hydroxy-
1,4,5,6-Tetrahydronicotinamide Adenine Dinucleotide
(Referred To As (6htn)ad, Or Nadhx)
pdb|1BDM|A Chain A, Malate Dehydrogenase (E.C.1.1.1.37) Mutant With Thr 189
Replaced By Ile (T189i) Complexed With Beta-6-Hydroxy-
1,4,5,6-Tetrahydronicotinamide Adenine Dinucleotide
(Referred To As (6htn)ad, Or Nadhx)
Length = 327
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 286 IEELTTKDIGYLVVRFLGNTAETQRALEYLNALGL 320
+ E+ KD+ LVV GN A T + Y NA GL
Sbjct: 116 LAEVAKKDVKVLVV---GNPANTNALIAYKNAPGL 147
>pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
Length = 531
Score = 26.2 bits (56), Expect = 5.5
Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 11/89 (12%)
Query: 213 SSGEIVERGSVEEIFANPKHAVTKELLGIRNEH---ADKKSQDV---YRIVFLGEHLD-- 264
S+ ++VER S++E+F + + +L NE+ D K +D R F+G + D
Sbjct: 144 SACDLVERASIDEVFLD-LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDIN 202
Query: 265 --EPIISNLIKRFKIDVSIISGNIEELTT 291
P+I IK K + + + +L T
Sbjct: 203 SHLPLIPEKIKSLKFEGDVFNPEGRDLIT 231
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 327
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 286 IEELTTKDIGYLVVRFLGNTAETQRALEYLNALGL 320
+ E+ KD+ LVV GN A T + Y NA GL
Sbjct: 116 LAEVAKKDVKVLVV---GNPANTNALIAYKNAPGL 147
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 26.2 bits (56), Expect = 5.5
Identities = 23/70 (32%), Positives = 34/70 (47%), Gaps = 14/70 (20%)
Query: 11 IYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVN----GVN 66
I+ + F L G N EL+ + ++G GAGK+T+ L R GEV+ G N
Sbjct: 4 IFSSMFDKLWGSNKELR----ILILGLDGAGKTTI------LYRLQIGEVVTTKPTIGFN 53
Query: 67 LLKLKPKELQ 76
+ L K L+
Sbjct: 54 VETLSYKNLK 63
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 26.2 bits (56), Expect = 5.5
Identities = 11/27 (40%), Positives = 19/27 (69%)
Query: 24 LELKKGDILGVIGYSGAGKSTLIRLIN 50
LELK +G++G+ GKSTL+ +++
Sbjct: 153 LELKVLADVGLVGFPSVGKSTLLSVVS 179
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 25.8 bits (55), Expect = 7.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 8 IEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLI 49
+E++ F + +E K+G L +IG +G+GKS+L+ I
Sbjct: 3 LERVTVKNFRSHSDTVVEFKEGINL-IIGQNGSGKSSLLDAI 43
>pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
Length = 149
Score = 25.8 bits (55), Expect = 7.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 8 IEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLI 49
+E++ F + +E K+G L +IG +G+GKS+L+ I
Sbjct: 3 LERVTVKNFRSHSDTVVEFKEGINL-IIGQNGSGKSSLLDAI 43
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 25.4 bits (54), Expect = 9.3
Identities = 15/46 (32%), Positives = 24/46 (51%)
Query: 188 LDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEIFANPKHA 233
LD+ I + +E+ KEL N V+++G RG+ I P+ A
Sbjct: 170 LDVHNFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGA 215
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
Length = 379
Score = 25.4 bits (54), Expect = 9.3
Identities = 14/64 (21%), Positives = 35/64 (53%), Gaps = 2/64 (3%)
Query: 70 LKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKNKIKSRVHELLELVGLE 129
++P +LQ + + M+ +HFN + A+NV + ++ E ++ + R+ + + G++
Sbjct: 34 VEPYQLQNEKD-VQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQ-ADRIVKFAKANGMD 91
Query: 130 DKMH 133
+ H
Sbjct: 92 IRFH 95
>pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 418
Score = 25.4 bits (54), Expect = 9.3
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 5 LKNIEKIYENGFHALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNG 64
L +EKI E H L+ GDI G + G+S +++ L+ + +
Sbjct: 47 LSGLEKISEEDIHTANERRLKELIGDIAGKL---NTGRSRNDQVVTDLKLFMKNSLSIIS 103
Query: 65 VNLLKLKPKELQKARQKIGMIFQHF-NLLSAKNV 97
+LL+L +++A +I +I + NL A+ +
Sbjct: 104 THLLQLIKTLVERAAIEIDVILPGYTNLQKAQPI 137
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,744,578
Number of Sequences: 13198
Number of extensions: 69207
Number of successful extensions: 207
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 39
length of query: 327
length of database: 2,899,336
effective HSP length: 88
effective length of query: 239
effective length of database: 1,737,912
effective search space: 415360968
effective search space used: 415360968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)