BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646184|ref|NP_208368.1| ABC transporter, permease
protein (yaeE) [Helicobacter pylori 26695]
(215 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxi... 29 0.36
pdb|1NTD| Structure Of Alcaligenes Faecalis Nitrite Reduc... 29 0.48
pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase ... 29 0.48
pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase ... 29 0.48
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitri... 29 0.48
pdb|1C17|M Chain M, A1c12 Subcomplex Of F1fo Atp Synthase 26 4.0
pdb|1NIF| Mol_id: 1; Molecule: Nitrite Reductase; Chain: ... 26 4.0
pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein ... 25 5.3
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 25 9.0
>pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
Length = 341
Score = 29.3 bits (64), Expect = 0.36
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 SLVNNITITLISLIGYSAMAGALGAGGLGDL 171
+L+N T TL+ I + A GALG GGL ++
Sbjct: 81 TLINPETNTLMHNINFHAATGALGGGGLTEI 111
>pdb|1NTD| Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant M150e
That Contains Zinc
Length = 343
Score = 28.9 bits (63), Expect = 0.48
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 SLVNNITITLISLIGYSAMAGALGAGGLGDL 171
+L+N T TL+ I + A GALG GGL ++
Sbjct: 87 TLINPETNTLMHNIDFHAATGALGGGGLTEI 117
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 28.9 bits (63), Expect = 0.48
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 SLVNNITITLISLIGYSAMAGALGAGGLGDL 171
+L+N T TL+ I + A GALG GGL ++
Sbjct: 81 TLINPETNTLMHNIDFHAATGALGGGGLTEI 111
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 28.9 bits (63), Expect = 0.48
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 SLVNNITITLISLIGYSAMAGALGAGGLGDL 171
+L+N T TL+ I + A GALG GGL ++
Sbjct: 81 TLINPETNTLMHNIDFHAATGALGGGGLTEI 111
>pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
Length = 343
Score = 28.9 bits (63), Expect = 0.48
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 SLVNNITITLISLIGYSAMAGALGAGGLGDL 171
+L+N T TL+ I + A GALG GGL ++
Sbjct: 87 TLINPETNTLMHNIDFHAATGALGGGGLTEI 117
>pdb|1C17|M Chain M, A1c12 Subcomplex Of F1fo Atp Synthase
Length = 177
Score = 25.8 bits (55), Expect = 4.0
Identities = 16/70 (22%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Query: 3 SQMLIQATLETLYMVFVASFLAVVFGLPLGVLLLVSKKGHLLNKPLLHKILDTSINMTRS 62
S+++ L VF+ + + + LP+ +L +++ H+L P L + +N+T S
Sbjct: 4 SKLIAPLALTIFVWVFLMNLMDL---LPIDLLPYIAE--HVLGLPALRVVPSADVNVTLS 58
Query: 63 FPFIILIILL 72
+ I++L
Sbjct: 59 MALGVFILIL 68
>pdb|1NIF| Mol_id: 1; Molecule: Nitrite Reductase; Chain: Null; Ec: 1.7.99.3;
Other_details: Ph 5.4 ("t2d") Type Ii Copper Depleted
pdb|1NIE| Mol_id: 1; Molecule: Nitrite Reductase; Chain: Null; Ec: 1.7.99.3;
Other_details: Ph 5.0 ("ph5")
pdb|1NIC| Mol_id: 1; Molecule: Nitrite Reductase; Chain: Null; Ec: 1.7.99.3;
Other_details: Ph 6.0 ("kp")
pdb|2NRD| Mol_id: 1; Molecule: Nitrite Reductase; Chain: Null; Ec: 1.7.99.3;
Other_details: Ph 5.4 ("hr")
pdb|1NID| Mol_id: 1; Molecule: Nitrite Reductase; Chain: Null; Ec: 1.7.99.3;
Other_details: Ph 5.4 ("nt1") Nitrite Soaked
pdb|1NIA|A Chain A, Mol_id: 1; Molecule: Nitrite Reductase; Chain: A, B, C;
Ec: 1.7.99.3; Other_details: Ph 6.2 ("62")
pdb|1NIB|A Chain A, Mol_id: 1; Molecule: Nitrite Reductase; Chain: A, B, C;
Ec: 1.7.99.3; Other_details: Ph 6.8 ("68")
pdb|1NIA|B Chain B, Mol_id: 1; Molecule: Nitrite Reductase; Chain: A, B, C;
Ec: 1.7.99.3; Other_details: Ph 6.2 ("62")
pdb|1NIA|C Chain C, Mol_id: 1; Molecule: Nitrite Reductase; Chain: A, B, C;
Ec: 1.7.99.3; Other_details: Ph 6.2 ("62")
pdb|1NIB|B Chain B, Mol_id: 1; Molecule: Nitrite Reductase; Chain: A, B, C;
Ec: 1.7.99.3; Other_details: Ph 6.8 ("68")
pdb|1NIB|C Chain C, Mol_id: 1; Molecule: Nitrite Reductase; Chain: A, B, C;
Ec: 1.7.99.3; Other_details: Ph 6.8 ("68")
Length = 340
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 142 LVNNITITLISLIGYSAMAGALGAGGL 168
L+N T TL+ I + A GALG G L
Sbjct: 85 LINPDTNTLLHNIDFHAATGALGGGAL 111
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From
Methanococcus Jannaschii
Length = 219
Score = 25.4 bits (54), Expect = 5.3
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 46 KPLLHKILDTSINMTRSFPFIILIILLLPLSRFLIGTSIGSSASIIPLAISAIPFVAKLF 105
KPL+ ++ T + TR P+ + L+G + I+ + + VAK +
Sbjct: 140 KPLVERLKKTVVINTRDKPYF----------QVLVGNEKMTDEQIVDNIEAVLNVVAKKY 189
Query: 106 ENSLMEVEHGKIETTL 121
E L ++ ++ T+
Sbjct: 190 EKGLYHIKDAYVKLTM 205
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 24.6 bits (52), Expect = 9.0
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 2 ISQMLIQ--ATLETLYMVFVASFLAVVFGLPLGVLLLVSKKGHLLNKPL 48
IS +IQ A+L ++++ ASF +V+ L G + +V L +PL
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPL 298
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.144 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 966,056
Number of Sequences: 13198
Number of extensions: 33920
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 2,899,336
effective HSP length: 84
effective length of query: 131
effective length of database: 1,790,704
effective search space: 234582224
effective search space used: 234582224
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)