BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646185|ref|NP_208369.1| LPS biosynthesis protein
[Helicobacter pylori 26695]
(372 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli >g... 27 4.9
pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The D... 26 8.3
pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r 26 8.3
pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin 26 8.3
pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r 26 8.3
pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r 26 8.3
>pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli
pdb|1KQG|A Chain A, Formate Dehydrogenase N From E. Coli
Length = 1015
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 5/37 (13%)
Query: 255 NILSNPIIMHYESDKDALGIYNGKPWEFP-LGNQYHL 290
N++SNP++ YE D + GK +FP +G Y L
Sbjct: 865 NVVSNPVVRLYEQD----ALRMGKKEQFPYVGTTYRL 897
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 25.8 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 201 LPLHYCVLPYYYQEELD----DLRHKASLPIRFEIIHQDKPNE 239
+ LH+ +PY+ EEL +L++ + F + QDK E
Sbjct: 222 MSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 264
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 25.8 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 201 LPLHYCVLPYYYQEELD----DLRHKASLPIRFEIIHQDKPNE 239
+ LH+ +PY+ EEL +L++ + F + QDK E
Sbjct: 202 MSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 244
>pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin
Length = 360
Score = 25.8 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 201 LPLHYCVLPYYYQEELD----DLRHKASLPIRFEIIHQDKPNE 239
+ LH+ +PY+ EEL +L++ + F + QDK E
Sbjct: 221 MSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 263
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 25.8 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 201 LPLHYCVLPYYYQEELD----DLRHKASLPIRFEIIHQDKPNE 239
+ LH+ +PY+ EEL +L++ + F + QDK E
Sbjct: 202 MSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 244
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 25.8 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 201 LPLHYCVLPYYYQEELD----DLRHKASLPIRFEIIHQDKPNE 239
+ LH+ +PY+ EEL +L++ + F + QDK E
Sbjct: 202 MSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 244
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.326 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,213,913
Number of Sequences: 13198
Number of extensions: 91920
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 6
length of query: 372
length of database: 2,899,336
effective HSP length: 90
effective length of query: 282
effective length of database: 1,711,516
effective search space: 482647512
effective search space used: 482647512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)