BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646186|ref|NP_208370.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LXA| Udp N-Acetylglucosamine Acyltransferase 28 0.53
pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Do... 26 2.0
pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethyla... 25 2.6
pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bo... 25 3.4
pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex ... 25 4.5
pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phos... 25 4.5
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular ... 25 4.5
pdb|1HWT|C Chain C, Structure Of A Hap1DNA COMPLEX REVEALS ... 25 4.5
pdb|2HAP|C Chain C, Structure Of A Hap1-18DNA COMPLEX REVEA... 25 4.5
pdb|1OCT|C Chain C, Oct-1 (Pou Domain) 25 4.5
pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehy... 25 4.5
pdb|1QP9|A Chain A, Structure Of Hap1-Pc7 Complexed To The ... 24 5.8
pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogen... 24 7.6
pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydro... 24 7.6
pdb|1POG| Oct-1 Pou Homeodomain Dna-Binding Protein Mutan... 23 10.0
pdb|1HWT|D Chain D, Structure Of A Hap1DNA COMPLEX REVEALS ... 23 10.0
pdb|2HAP|D Chain D, Structure Of A Hap1-18DNA COMPLEX REVEA... 23 10.0
>pdb|1LXA| Udp N-Acetylglucosamine Acyltransferase
Length = 262
Score = 27.7 bits (60), Expect = 0.53
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 14 FLRAEGEH---YEIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIRLQSAFLENLS 70
++ A+G H + + +E K ++E +T I AYK +G +++ + A L
Sbjct: 184 YVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETY 243
Query: 71 QTEQQFDDYFEKDFKSV 87
+ F D+F + + +
Sbjct: 244 PEVKAFTDFFARSTRGL 260
>pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1HF0|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
Length = 159
Score = 25.8 bits (55), Expect = 2.0
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 47 KTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSN 105
+T IET ++ L+ +FLEN T ++ ++ EV++ N + EK N
Sbjct: 104 RTSIETN---IRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFSNRRQKEKRIN 159
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 25.4 bits (54), Expect = 2.6
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 94 LKNLQSLEKTSNKLACITPKNAKNFEILEGAITQI 128
+K + + T+N LA + +NFEI+EG +T +
Sbjct: 140 MKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTV 174
>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
Length = 160
Score = 25.0 bits (53), Expect = 3.4
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 47 KTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSN 105
+T IET ++ L+ +F+EN T + E+ EV++ N + EK N
Sbjct: 105 RTSIETN---IRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160
>pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex Containing An Oca-B
Peptide, The Oct-1 Pou Domain, And An Octamer Element
pdb|1CQT|B Chain B, Crystal Structure Of A Ternary Complex Containing An Oca-B
Peptide, The Oct-1 Pou Domain, And An Octamer Element
Length = 163
Score = 24.6 bits (52), Expect = 4.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 47 KTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSN 105
+T IET ++ L+ +FLEN T ++ ++ EV++ N + EK N
Sbjct: 107 RTSIETN---IRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRIN 162
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 24.6 bits (52), Expect = 4.5
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 94 LKNLQSLEKTSNKLACITPKNAKNFEILEGAITQI 128
+K + + T+N LA + +NFEI+EG +T +
Sbjct: 140 MKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTV 174
>pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
Length = 692
Score = 24.6 bits (52), Expect = 4.5
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 56 RTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNA 115
R +RL+ +N S +Q +DY + +++ ++ +L S++ KLA K
Sbjct: 87 RIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLT 146
Query: 116 KNFEILEGA 124
N I GA
Sbjct: 147 SNLRIGFGA 155
>pdb|1HWT|C Chain C, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
pdb|1HWT|G Chain G, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
Length = 81
Score = 24.6 bits (52), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 73 EQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKL 107
EQ + + EK+ LK L + ++SLEKT +K+
Sbjct: 43 EQTWAEEAEKELLKDNELKKLRERVKSLEKTLSKV 77
>pdb|2HAP|C Chain C, Structure Of A Hap1-18DNA COMPLEX REVEALS THAT PROTEINDNA
Interactions Can Have Direct Allosteric Effects On
Transcriptional Activation
Length = 81
Score = 24.6 bits (52), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 73 EQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKL 107
EQ + + EK+ LK L + ++SLEKT +K+
Sbjct: 43 EQTWAEEAEKELLKDNELKKLRERVKSLEKTLSKV 77
>pdb|1OCT|C Chain C, Oct-1 (Pou Domain)
Length = 156
Score = 24.6 bits (52), Expect = 4.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 47 KTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSN 105
+T IET ++ L+ +FLEN T ++ ++ EV++ N + EK N
Sbjct: 100 RTSIETN---IRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRIN 155
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 24.6 bits (52), Expect = 4.5
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 94 LKNLQSLEKTSNKLACITPKNAKNFEILEGAITQI 128
+K + + T+N LA + +NFEI+EG +T +
Sbjct: 140 MKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTV 174
>pdb|1QP9|A Chain A, Structure Of Hap1-Pc7 Complexed To The Uas Of Cyc7
pdb|1QP9|D Chain D, Structure Of Hap1-Pc7 Complexed To The Uas Of Cyc7
pdb|1QP9|B Chain B, Structure Of Hap1-Pc7 Complexed To The Uas Of Cyc7
pdb|1QP9|C Chain C, Structure Of Hap1-Pc7 Complexed To The Uas Of Cyc7
Length = 76
Score = 24.3 bits (51), Expect = 5.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 73 EQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNK 106
EQ + + EK+ LK L + ++SLEKT +K
Sbjct: 43 EQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 76
>pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
pdb|1GPD|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
Length = 334
Score = 23.9 bits (50), Expect = 7.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 103 TSNKLACITPKNAKNFEILEGAITQI 128
T+N LA + +NFEI+EG +T +
Sbjct: 150 TTNCLAPVAKVLHENFEIVEGLMTTV 175
>pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|2 Chain 2, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|3 Chain 3, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|4 Chain 4, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 333
Score = 23.9 bits (50), Expect = 7.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 103 TSNKLACITPKNAKNFEILEGAITQI 128
T+N LA + +NFEI+EG +T +
Sbjct: 149 TTNCLAPVAKVLHENFEIVEGLMTTV 174
>pdb|1POG| Oct-1 Pou Homeodomain Dna-Binding Protein Mutant With Arg Gly Ser
His Met Inserted At The N-Terminus And Asp Ile Inserted
At The C-Terminus (Ins(Rgshm-R6),Ins(I66-Di) (Nmr, 13
Structures)
Length = 67
Score = 23.5 bits (49), Expect = 10.0
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 47 KTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEK 102
+T IET ++ L+ +FLEN T ++ ++ EV++ N + EK
Sbjct: 11 RTSIETN---IRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK 63
>pdb|1HWT|D Chain D, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
pdb|1HWT|H Chain H, Structure Of A Hap1DNA COMPLEX REVEALS DRAMATICALLY
Asymmetric Dna Binding By A Homodimeric Protein
Length = 81
Score = 23.5 bits (49), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 73 EQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKL 107
EQ + + EK+ +K L + ++SLEKT +K+
Sbjct: 43 EQTWAEEAEKELLKDNEVKKLRERVKSLEKTLSKV 77
>pdb|2HAP|D Chain D, Structure Of A Hap1-18DNA COMPLEX REVEALS THAT PROTEINDNA
Interactions Can Have Direct Allosteric Effects On
Transcriptional Activation
Length = 81
Score = 23.5 bits (49), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 73 EQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKL 107
EQ + + EK+ +K L + ++SLEKT +K+
Sbjct: 43 EQTWAEEAEKELLKDNEVKKLRERVKSLEKTLSKV 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,449
Number of Sequences: 13198
Number of extensions: 20646
Number of successful extensions: 50
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 2,899,336
effective HSP length: 79
effective length of query: 63
effective length of database: 1,856,694
effective search space: 116971722
effective search space used: 116971722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)