BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646187|ref|NP_208371.1| hypothetical protein
[Helicobacter pylori 26695]
         (220 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1LNS|A  Chain A, Crystal Structure Analysis Of The X-Pro...    27  2.4
pdb|1IIC|A  Chain A, Crystal Structure Of Saccharomyces Cere...    26  4.1

>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
           Aminopeptidase From Lactococcus Lactis
          Length = 763

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 10/28 (35%), Positives = 13/28 (45%)

Query: 119 NSWRGMPSGHAGGVFSAAGFVYYRYGWK 146
           N W+ +P GHA   F   G   Y   W+
Sbjct: 478 NFWKALPEGHAKHAFLHRGAHIYMNSWQ 505



>pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
           Myristoyltransferase With Bound Myristoylcoa
 pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae N-
           Myristoyltransferase With Bound Myristoylcoa
 pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
           Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
           And The Octapeptide Glyaskla
 pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
           Myristoyl-Coa And Peptide Analogs
          Length = 422

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 14/30 (46%), Positives = 16/30 (52%)

Query: 185 YLFTSRYKPKQWMLYPEISSDFKGSSRYGV 214
           YLF  R KP    L P+ S+D K  S  GV
Sbjct: 390 YLFNYRAKPITGGLNPDNSNDIKRRSNVGV 419



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.142    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,251,317
Number of Sequences: 13198
Number of extensions: 49140
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 2,899,336
effective HSP length: 85
effective length of query: 135
effective length of database: 1,777,506
effective search space: 239963310
effective search space used: 239963310
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)