BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646189|ref|NP_208373.1| pyridoxal phosphate
biosynthetic protein J (pdxJ) [Helicobacter pylori 26695]
(262 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HO4|B Chain B, Crystal Structure Of Pyridoxine 5'-Phos... 154 8e-39
pdb|1DDT| Diphtheria Toxin (Dimeric) >gi|576189|pdb|1MDT|... 27 3.1
pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron R... 26 4.1
pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenas... 26 5.3
pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Hepar... 25 7.0
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethy... 25 7.0
pdb|1A7S| Atomic Resolution Structure Of Hbp 25 7.0
pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin B... 25 7.0
pdb|1AE5| Human Heparin Binding Protein 25 7.0
pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron R... 25 9.1
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 25 9.1
>pdb|1HO4|B Chain B, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphat
pdb|1HO4|C Chain C, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphat
pdb|1HO1|D Chain D, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO4|A Chain A, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphat
pdb|1HO4|D Chain D, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphat
pdb|1HO1|B Chain B, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO1|A Chain A, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO1|C Chain C, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
Length = 242
Score = 154 bits (390), Expect = 8e-39
Identities = 99/262 (37%), Positives = 145/262 (54%), Gaps = 35/262 (13%)
Query: 4 GLNIDHIVTLREIRKTYEPEILEALFIAKNTHKVDLITIHLREDRRHIQNEDVLKLLEIS 63
G+NIDHI TLR R T P+ ++A FIA+ D IT+HLREDRRHI + DV L +
Sbjct: 6 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAG-ADGITVHLREDRRHITDRDVRILRQTL 64
Query: 64 PLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGLDCSLKG--LGEVIRAY 121
+N+E ++ E+ +++ KP +VPE R EVTTEGGLD + + + + +
Sbjct: 65 DTRMNLEMAVTEEM--LAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRL 122
Query: 122 HNKGIEVSLFIDPLKDALHFAREHQVKQVEFHTGVYANLHNALYSNANNQIHAISVLKDK 181
+ GI+VSLFID ++ + A E +E HTG YA+ K
Sbjct: 123 ADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADA--------------------K 162
Query: 182 SPKELKEELHNAFLQLRRMSKEAFF---MGITACAGHGLNYTNVKELLKIPSLRELNIGH 238
+ E +EL R++K A F +G+ AGHGL Y NVK + IP + ELNIGH
Sbjct: 163 TDAEQAQEL-------ARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGH 215
Query: 239 SVVSKAVLVGLEKAILEMAQLI 260
+++ +AV+ GL+ A+ EM +L+
Sbjct: 216 AIIGRAVMTGLKDAVAEMKRLM 237
>pdb|1DDT| Diphtheria Toxin (Dimeric)
pdb|1MDT|A Chain A, Monomeric Diphtheria Toxin
pdb|1MDT|B Chain B, Monomeric Diphtheria Toxin
pdb|1SGK| Nucleotide-Free Diphtheria Toxin
pdb|1F0L|B Chain B, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1XDT|T Chain T, Complex Of Diphtheria Toxin And Heparin-Binding Epidermal
Growth Factor
pdb|1TOX|A Chain A, Diphtheria Toxin Dimer Complexed With Nad
pdb|1TOX|B Chain B, Diphtheria Toxin Dimer Complexed With Nad
pdb|1F0L|A Chain A, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
Length = 535
Score = 26.6 bits (57), Expect = 3.1
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 155 GVYANLHNALYSNANNQIHAISVLKD 180
GV+ANLH A + +++ +IH+ + D
Sbjct: 482 GVHANLHVAFHRSSSEKIHSNEISSD 507
>pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 411
Score = 26.2 bits (56), Expect = 4.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 164 LYSNANNQIHAISVLKDKSPKELKEELHNAFLQLRRMSKEAFFMGITACAGHGLNYTNV 222
L+S +++ I V + +S + + H AFL++ EA + + AG LN V
Sbjct: 322 LFSPEKSRLPGI-VAEGRSDLYVSDAFHKAFLEVNEEGSEAAASTVISIAGRSLNSDRV 379
>pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-Phosphate Dehydrogenase
Length = 340
Score = 25.8 bits (55), Expect = 5.3
Identities = 20/68 (29%), Positives = 28/68 (40%), Gaps = 6/68 (8%)
Query: 43 HLREDRRHIQNEDVLKLLEISPLP------INIECSINAEITDFLCSLKNKPSKVTIVPE 96
H ++ I+N D+ + I+P INI E D L L+N P V I +
Sbjct: 193 HAKDVNSVIRNLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSK 252
Query: 97 NRNEVTTE 104
E T E
Sbjct: 253 YDAEATAE 260
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 25.4 bits (54), Expect = 7.0
Identities = 18/68 (26%), Positives = 28/68 (40%)
Query: 48 RRHIQNEDVLKLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGL 107
RR Q+ + +S + + ++N + L N S VTI+P T E G
Sbjct: 62 RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGT 121
Query: 108 DCSLKGLG 115
C + G G
Sbjct: 122 RCQVAGWG 129
>pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With
4-Phenylimidazole
pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
Length = 455
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 177 VLKDKSPKELKEELHNAFLQLRRMSKEA 204
V+ D SP+ KE LHNA L+ +M A
Sbjct: 87 VVFDASPERRKEMLHNAALRGEQMKGHA 114
>pdb|1A7S| Atomic Resolution Structure Of Hbp
Length = 221
Score = 25.4 bits (54), Expect = 7.0
Identities = 18/68 (26%), Positives = 28/68 (40%)
Query: 48 RRHIQNEDVLKLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGL 107
RR Q+ + +S + + ++N + L N S VTI+P T E G
Sbjct: 58 RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGT 117
Query: 108 DCSLKGLG 115
C + G G
Sbjct: 118 RCQVAGWG 125
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 25.4 bits (54), Expect = 7.0
Identities = 18/68 (26%), Positives = 28/68 (40%)
Query: 48 RRHIQNEDVLKLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGL 107
RR Q+ + +S + + ++N + L N S VTI+P T E G
Sbjct: 62 RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGT 121
Query: 108 DCSLKGLG 115
C + G G
Sbjct: 122 RCQVAGWG 129
>pdb|1AE5| Human Heparin Binding Protein
Length = 225
Score = 25.4 bits (54), Expect = 7.0
Identities = 18/68 (26%), Positives = 28/68 (40%)
Query: 48 RRHIQNEDVLKLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGL 107
RR Q+ + +S + + ++N + L N S VTI+P T E G
Sbjct: 62 RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGT 121
Query: 108 DCSLKGLG 115
C + G G
Sbjct: 122 RCQVAGWG 129
>pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 421
Score = 25.0 bits (53), Expect = 9.1
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 164 LYSNANNQIHAISVLKDKSPKELKEELHNAFLQLRRMSKEAFFMGITACAGHGLNYT 220
L+S +++ I V + +S + + H AFL++ EA + + AG L T
Sbjct: 335 LFSPEKSRLPGI-VAEGRSDLYVSDAFHKAFLEVNEEGSEAAASTVISIAGRSLRVT 390
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 25.0 bits (53), Expect = 9.1
Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 23/151 (15%)
Query: 44 LREDRRHIQNEDVLKLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTT 103
L D + Q E ++ ++I + +E + N L KNK K I+ + + T
Sbjct: 491 LLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLT 550
Query: 104 EGGLDCSLKGLGE-VIRAYHN----------------KGIEVSLFIDPLKDALHFAREHQ 146
+G K E + R+Y N G ++ FI KD +
Sbjct: 551 DGXQQVVNKTHKEDIYRSYANLIGKSGTAELKXKQGETGRQIGWFISYDKDNPNXXXAIN 610
Query: 147 VKQVE------FHTGVYANLHNALYSNANNQ 171
VK V+ ++ + +++ LY N N +
Sbjct: 611 VKDVQDKGXASYNAKISGKVYDELYENGNKK 641
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,431,144
Number of Sequences: 13198
Number of extensions: 58802
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 11
length of query: 262
length of database: 2,899,336
effective HSP length: 86
effective length of query: 176
effective length of database: 1,764,308
effective search space: 310518208
effective search space used: 310518208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)